Variational autoencoder for single cell RNA-seq datasets
☆44Aug 15, 2017Updated 8 years ago
Alternatives and similar repositories for VASC
Users that are interested in VASC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GrandPrix☆16May 27, 2019Updated 6 years ago
- Deep learning for single-cell transcript counts☆89Mar 14, 2025Updated last year
- ☆12Jul 13, 2018Updated 7 years ago
- ☆26Apr 3, 2019Updated 7 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Dec 17, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Sep 26, 2017Updated 8 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Jun 18, 2018Updated 7 years ago
- ☆16Sep 17, 2025Updated 7 months ago
- ☆39Apr 9, 2021Updated 5 years ago
- Deep count autoencoder for denoising scRNA-seq data☆271Mar 21, 2024Updated 2 years ago
- Population balance analysis☆46Apr 25, 2019Updated 7 years ago
- Feature extraction algorithm for genomic data☆15Sep 28, 2021Updated 4 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆61Aug 30, 2022Updated 3 years ago
- ☆38Jan 21, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Normalization for single cell RNA-seq data☆10Aug 25, 2022Updated 3 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- ☆17Sep 20, 2020Updated 5 years ago
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Dec 15, 2018Updated 7 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆44Mar 13, 2024Updated 2 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Jul 23, 2020Updated 5 years ago
- a user-friendly and modular design R package tailored for analyzing single-cell and spatial transcriptome sequencing data of hematopoieti…☆18Apr 17, 2025Updated last year
- Zero-inflated dimensionality reduction algorithm for single-cell data☆110Jun 2, 2020Updated 5 years ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 10 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- scDeepCluster for Single Cell RNA-seq data☆106Jul 10, 2024Updated last year
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆10Aug 4, 2020Updated 5 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- ☆12May 24, 2022Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆47Jul 19, 2024Updated last year
- Python Implementation of SIMLR for single-cell visualization and analysis☆24Jul 28, 2022Updated 3 years ago
- Single-cell RNA-seq clustering and annotation☆13Oct 26, 2020Updated 5 years ago
- Clustering through Imputation and Dimensionality Reduction☆63Sep 21, 2017Updated 8 years ago
- ☆15Jun 17, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago
- ☆28Jan 28, 2020Updated 6 years ago
- ☆10Nov 5, 2023Updated 2 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 4 years ago
- Cytometry by time-of-flight(CyTOF) data is very useful in studying the presence/absence of antigens/surface markers at single cell level.…☆15Jun 1, 2020Updated 5 years ago
- Code sharing related to DREAM challenges☆23Feb 21, 2017Updated 9 years ago