Variational autoencoder for single cell RNA-seq datasets
☆44Aug 15, 2017Updated 8 years ago
Alternatives and similar repositories for VASC
Users that are interested in VASC are comparing it to the libraries listed below
Sorting:
- GrandPrix☆16May 27, 2019Updated 6 years ago
- Deep learning for single-cell transcript counts☆90Mar 14, 2025Updated 11 months ago
- ☆26Apr 3, 2019Updated 6 years ago
- ☆38Jan 21, 2026Updated last month
- ☆12Jul 13, 2018Updated 7 years ago
- Wasserstein Generative Adversarial Network for analysing scRNAseq data☆34Dec 17, 2020Updated 5 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆45Mar 13, 2024Updated last year
- ☆13Mar 20, 2021Updated 4 years ago
- Python Implementation of SIMLR for single-cell visualization and analysis☆24Jul 28, 2022Updated 3 years ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆61Aug 30, 2022Updated 3 years ago
- Deep count autoencoder for denoising scRNA-seq data☆269Mar 21, 2024Updated last year
- scDeepCluster for Single Cell RNA-seq data☆105Jul 10, 2024Updated last year
- Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"☆57Dec 15, 2018Updated 7 years ago
- ☆15Jun 17, 2021Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆46Jul 19, 2024Updated last year
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Mar 27, 2021Updated 4 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆53Jan 17, 2022Updated 4 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Jun 18, 2018Updated 7 years ago
- ☆16Sep 26, 2017Updated 8 years ago
- Classification of Single cells by Transfer Learning☆10Oct 11, 2025Updated 4 months ago
- ☆19May 5, 2021Updated 4 years ago
- ☆37Apr 9, 2021Updated 4 years ago
- ☆17Sep 20, 2020Updated 5 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Jul 23, 2020Updated 5 years ago
- ☆19Jul 8, 2021Updated 4 years ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 8 months ago
- Zero-inflated dimensionality reduction algorithm for single-cell data☆111Jun 2, 2020Updated 5 years ago
- scMatch: a single-cell gene expression profile annotation tool using reference datasets☆21Aug 11, 2020Updated 5 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Sep 24, 2019Updated 6 years ago
- ☆10Dec 17, 2019Updated 6 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Jun 8, 2021Updated 4 years ago
- ☆22May 6, 2022Updated 3 years ago
- scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks☆11Aug 4, 2020Updated 5 years ago
- fast hierarchical clustering for large-scale single-cell data☆10Jul 11, 2021Updated 4 years ago
- Population balance analysis☆44Apr 25, 2019Updated 6 years ago
- Working example of snakemake tutorial using UAB Cheaha computing cluster via SLURM scheduler☆10Nov 8, 2018Updated 7 years ago
- Marker gene profile estimation method used in NeuroExpresso manuscript☆14Jul 11, 2019Updated 6 years ago