wanglf19 / scCapsLinks
An interpretable deep-learning architecture of capsule networks for identifying cellular-type gene expression programs from single-cell RNA-seq data
☆26Updated 5 years ago
Alternatives and similar repositories for scCaps
Users that are interested in scCaps are comparing it to the libraries listed below
Sorting:
- Source codes and example scripts for chromatin tracing projects in Zhuang lab☆28Updated 3 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆28Updated 2 years ago
- Code for reproducing the Sei manuscript results☆17Updated 3 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆14Updated 5 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Updated 5 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- epigenome analysis to rank transcription factors☆14Updated 6 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15Updated 4 years ago
- ☆36Updated 3 years ago
- ☆30Updated last year
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 5 years ago
- ☆27Updated 2 years ago
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆29Updated 3 years ago
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- This is a python package for genomics study with a GCN framework.☆43Updated last year
- A comprehensive tool to infer TF-centred, spatial gene regulatory networks for the spatially resolved transcriptomic data.☆18Updated 7 months ago
- ☆13Updated 4 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- ☆28Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- ☆12Updated 5 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"☆46Updated 2 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆77Updated 2 years ago
- Data and analysis for the Splatter paper☆29Updated 8 years ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆63Updated last year
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆19Updated 4 months ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆32Updated 3 years ago
- ☆12Updated 4 months ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago