wanglf19 / scCaps
An interpretable deep-learning architecture of capsule networks for identifying cellular-type gene expression programs from single-cell RNA-seq data
☆26Updated 4 years ago
Alternatives and similar repositories for scCaps
Users that are interested in scCaps are comparing it to the libraries listed below
Sorting:
- ☆11Updated 4 years ago
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆13Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 4 years ago
- Source codes and example scripts for chromatin tracing projects in Zhuang lab☆26Updated 3 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 2 years ago
- ☆11Updated 4 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- ☆26Updated 7 months ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data☆15Updated 4 years ago
- multiway chromatin interaction, 3D genome, single-nucleus, hypergraph representation learning☆29Updated 2 years ago
- Python Implementation of MetaNeighbor scRNAseq Analysis Method☆9Updated 10 months ago
- Code for reproducing the Sei manuscript results☆16Updated 3 years ago
- Assembles a graph manifold from time series single-cell RNAseq data☆17Updated 4 years ago
- Simultaneous deep generative modeling and clustering of single cell genomic data☆32Updated 2 years ago
- ☆28Updated 4 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Updated 3 years ago
- Compute a 2D embedding of a data matrix given supervised class information.☆12Updated 5 years ago
- Statistical analysis for spatial omics data☆10Updated 2 years ago
- Reproducibility Repo for mvTCR paper☆13Updated last year
- Tools for sgRNA calling in direct capture Perturb-seq data☆33Updated last year
- PRObabilistic Simulations of ScRNA-seq Tree-like Topologies☆26Updated last year
- Imputation method for scRNA-seq based on low-rank approximation☆74Updated last year
- Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)☆37Updated 6 months ago
- Marker Selection by matching manifolds and elastic net☆23Updated 6 months ago
- Paired-seq☆14Updated 9 months ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially usin…☆12Updated 2 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago