Alternatives and similar repositories for STARsolo

Users that are interested in STARsolo are comparing it to the libraries listed below

• TheHumphreysLab / plot1cell
  ☆112Updated 4 months ago
• rpolicastro / scProportionTest
  ☆68Updated last year
• JiekaiLab / scTE
  ☆108Updated last year
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆94Updated 5 years ago
• bioinfo-ibms-pumc / SCSA
  SCSA: cell type annotation for single-cell RNA-seq data
  ☆90Updated 2 years ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆107Updated 3 months ago
• BaderLab / CellAnnotationTutorial
  Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods
  ☆95Updated 2 years ago
• fl-yu / CUT-RUNTools-2.0
  CUT&RUN and CUT&Tag data processing and analysis
  ☆109Updated 4 months ago
• MGI-tech-bioinformatics / DNBelab_C_Series_HT_scRNA-analysis-software
  An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
  ☆101Updated last week
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆110Updated 2 months ago
• liulab-dfci / RIMA_pipeline
  ☆82Updated last year
• timoast / sinto
  Tools for single-cell data processing
  ☆125Updated last year
• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆89Updated last year
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆116Updated 10 months ago
• single-cell-genetics / cellSNP
  Pileup biallelic SNPs from single-cell and bulk RNA-seq data
  ☆78Updated 3 years ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆115Updated 2 months ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆107Updated 2 years ago
• jcao89757 / SCINA
  SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples
  ☆69Updated 3 years ago
• chris-mcginnis-ucsf / MULTI-seq
  R implementation of MULTI-seq sample classification workflow
  ☆63Updated last year
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆107Updated 2 months ago
• JiekaiLab / scDIOR
  scDIOR: Single cell data IO softwaRe
  ☆143Updated 3 years ago
• CebolaLab / ATAC-seq
  Analysis pipeline for ATAC-seq data
  ☆63Updated last year
• rnakato / ShortCake
  A docker image for single-cell analysis
  ☆88Updated 5 months ago
• MarioniLab / EmbryoTimecourse2018
  Data and analysis scripts for our Embryo Timecourse paper.
  ☆68Updated 5 years ago
• ysuzukilab / Cibersortx
  Repository for Cibersortx
  ☆61Updated 4 years ago
• reskejak / ATAC-seq
  Basic workflow for ATAC-seq analysis
  ☆81Updated last year
• QuKunLab / ATAC-pipe
  Analysis pipeline for ATAC-seq Data
  ☆61Updated 3 years ago
• Hoohm / CITE-seq-Count
  A tool that allows to get UMI counts from a single cell protein assay
  ☆82Updated 2 months ago
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆103Updated 8 months ago
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆139Updated 3 years ago