cellgeni / STARsolo
wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq
☆44Updated last month
Related projects ⓘ
Alternatives and complementary repositories for STARsolo
- ☆95Updated last year
- Significance analysis for clustering single-cell RNA-sequencing data☆96Updated 2 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆66Updated 5 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆92Updated 4 months ago
- ☆73Updated 9 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 4 months ago
- ☆59Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆65Updated 4 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆47Updated 6 months ago
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆72Updated 4 years ago
- reticulate-free single cell format conversion☆82Updated this week
- ☆100Updated 6 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources…☆72Updated 6 years ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆90Updated 11 months ago
- scDIOR: Single cell data IO softwaRe☆132Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆92Updated 5 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆58Updated this week
- A tool for semi-automatic cell type harmonization and integration☆91Updated 9 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆87Updated 11 months ago
- ☆57Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆60Updated 11 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆58Updated 3 months ago
- SCSA: cell type annotation for single-cell RNA-seq data☆82Updated last year
- ☆47Updated 2 years ago
- Repository for Cibersortx☆51Updated 3 years ago
- Analysis of cell-cell communication at single-cell resolution☆96Updated last month
- ☆94Updated 2 weeks ago
- An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets☆71Updated last month
- Single cell RNA-seq analysis bundle☆33Updated 5 years ago