tanlabcode / scATAC-proLinks
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
☆24Updated 11 months ago
Alternatives and similar repositories for scATAC-pro
Users that are interested in scATAC-pro are comparing it to the libraries listed below
Sorting:
- ☆33Updated 6 years ago
- ☆49Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆44Updated last year
- ☆34Updated 6 years ago
- ☆48Updated 5 years ago
- scWGCNA☆61Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆56Updated 4 years ago
- ☆12Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- ☆27Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ☆30Updated 2 years ago
- ☆38Updated last year
- ☆32Updated 7 months ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 3 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Mapping pipeline for snmC-seq based technologies.☆21Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- ☆47Updated 7 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆51Updated last year
- ☆39Updated 4 years ago