tanlabcode / scATAC-pro
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
☆24Updated 7 months ago
Alternatives and similar repositories for scATAC-pro:
Users that are interested in scATAC-pro are comparing it to the libraries listed below
- ☆49Updated 8 months ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- ☆32Updated 5 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- ☆33Updated 5 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- ☆47Updated 5 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 4 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- ☆30Updated 2 years ago
- R code for single-cell analysis of intestinal epithelial cells☆22Updated 7 years ago
- ☆27Updated 3 years ago
- ☆19Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆29Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆19Updated 9 months ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- ☆47Updated 3 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 6 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 7 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- ☆17Updated 10 months ago