tanlabcode / scATAC-proLinks
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
☆24Updated 10 months ago
Alternatives and similar repositories for scATAC-pro
Users that are interested in scATAC-pro are comparing it to the libraries listed below
Sorting:
- ☆49Updated last year
- ☆33Updated 6 years ago
- ☆34Updated 6 years ago
- ☆30Updated 2 years ago
- Repo for website and other code for mouse sci-ATAC-seq project☆28Updated 4 years ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 2 years ago
- PECA is a software for inferring context specific gene regulatory network from paired gene expression and chromatin accessibility data☆44Updated last year
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆55Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- scWGCNA☆61Updated 2 years ago
- ☆47Updated 6 months ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Single cell epigenomic clustering based on accessibility pattern☆23Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆20Updated 6 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ☆47Updated 5 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated 2 years ago
- ☆18Updated last year
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- Use an ensemble of variant callers to call variants from ATAC-seq data☆23Updated 2 months ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- ☆58Updated 11 months ago
- ☆27Updated 4 years ago
- Identifying tumor cells at the single-cell level using machine learning☆48Updated 8 months ago
- ☆32Updated 6 months ago
- Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)☆24Updated 5 years ago