pachterlab / kb_pythonLinks
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
☆178Updated 3 weeks ago
Alternatives and similar repositories for kb_python
Users that are interested in kb_python are comparing it to the libraries listed below
Sorting:
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- Clustering scRNAseq by genotypes☆190Updated last week
- Tools for single-cell data processing☆127Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆122Updated this week
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated 2 weeks ago
- Scaling Single Cell Analysis to Millions of Cells☆236Updated last week
- Detect doublets in single-cell RNA-seq data☆159Updated 4 years ago
- Java tools for analyzing Drop-seq data☆130Updated last week
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆159Updated 2 weeks ago
- A docker image for single-cell analysis☆97Updated 3 weeks ago
- chromatin Variability Across Regions (of the genome!)☆182Updated last year
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆239Updated 4 months ago
- Conversion between scRNA-seq objects☆191Updated last week
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆198Updated 5 years ago
- R package to access DoRothEA's regulons☆153Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆122Updated 6 months ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆209Updated 2 years ago
- Haplotype-aware CNV analysis from single-cell RNA-seq☆198Updated 3 weeks ago
- scDIOR: Single cell data IO softwaRe☆150Updated 3 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆132Updated last year
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆78Updated 2 weeks ago
- Differential expression analysis for single-cell RNA-seq data.☆205Updated 3 weeks ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆148Updated 11 months ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆69Updated 5 months ago
- Convert between AnnData and SingleCellExperiment☆142Updated last week
- ☆188Updated last week
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆96Updated 6 years ago