A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
☆186Mar 11, 2026Updated 3 weeks ago
Alternatives and similar repositories for kb_python
Users that are interested in kb_python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆120Mar 10, 2026Updated 3 weeks ago
- Tools for working with BUS files☆102May 27, 2025Updated 10 months ago
- Near-optimal RNA-Seq quantification☆755Mar 16, 2026Updated 3 weeks ago
- A tool to find sequencing data and metadata from public databases.☆598Aug 13, 2024Updated last year
- CellRank: dynamics from multi-view single-cell data☆437Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A tool for semi-automatic cell type classification☆464Mar 21, 2026Updated 2 weeks ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Nov 6, 2021Updated 4 years ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆68Jul 8, 2023Updated 2 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- scSNV Mapping tool for 10X Single Cell Data☆26Dec 19, 2025Updated 3 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆594Jun 26, 2025Updated 9 months ago
- 🧬 gget enables efficient querying of genomic reference databases☆1,112Updated this week
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆19Mar 31, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Gene Set Enrichment Analysis in Python☆697Updated this week
- Episcanpy: Epigenomics Single Cell Analysis in Python☆151Dec 5, 2024Updated last year
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 5 months ago
- Convert between AnnData and SingleCellExperiment☆148Updated this week
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,591Updated this week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆489Mar 17, 2026Updated 3 weeks ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,400Mar 31, 2026Updated last week
- https://www.sc-best-practices.org☆1,173Apr 2, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Jul 2, 2024Updated last year
- ☆10Dec 8, 2023Updated 2 years ago
- A scanpy extension to analyse single-cell TCR and BCR data.☆246Updated this week
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆470Jun 6, 2025Updated 10 months ago
- Python module to analyse CRISPR-based libraries☆13Apr 1, 2021Updated 5 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆43Sep 18, 2025Updated 6 months ago
- RNA velocity estimation in Python☆174Oct 7, 2025Updated 6 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆385Jul 30, 2025Updated 8 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆84Feb 18, 2026Updated last month
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆354Dec 9, 2025Updated 4 months ago
- A rust framework to make using alevin-fry even simpler☆62Mar 23, 2026Updated 2 weeks ago
- 𝒫robabilistic modeling of RNA velocity ⬱☆49Mar 30, 2026Updated last week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆307Mar 6, 2023Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆427Feb 4, 2026Updated 2 months ago
- miRTrace☆12Jun 14, 2023Updated 2 years ago