pachterlab / kb_pythonLinks
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
☆182Updated 2 months ago
Alternatives and similar repositories for kb_python
Users that are interested in kb_python are comparing it to the libraries listed below
Sorting:
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆122Updated last week
- Clustering scRNAseq by genotypes☆191Updated last month
- Tools for single-cell data processing☆130Updated last year
- Scaling Single Cell Analysis to Millions of Cells☆253Updated 2 weeks ago
- Efficient genotyping bi-allelic SNPs on single cells☆155Updated 2 months ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆243Updated 6 months ago
- R package to access DoRothEA's regulons☆152Updated last year
- chromatin Variability Across Regions (of the genome!)☆184Updated last year
- Detect doublets in single-cell RNA-seq data☆159Updated 5 years ago
- scDIOR: Single cell data IO softwaRe☆151Updated 3 years ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Updated last month
- A docker image for single-cell analysis☆102Updated 2 months ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count data☆199Updated 5 years ago
- Java tools for analyzing Drop-seq data☆131Updated this week
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆98Updated 2 years ago
- CUT&RUN and CUT&Tag data processing and analysis☆113Updated 9 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆124Updated 7 months ago
- SCSA: cell type annotation for single-cell RNA-seq data☆92Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆209Updated 2 years ago
- A single cell transcriptomics pipeline for QC, integration and making the data presentable☆81Updated last month
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆194Updated 2 years ago
- ☆114Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆75Updated 6 months ago
- Haplotype-aware CNV analysis from single-cell RNA-seq☆200Updated 2 months ago
- AUCell: score single cells with gene regulatory networks☆180Updated last year
- Detect doublets in single-cell RNA-seq data☆86Updated 6 years ago
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆68Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆215Updated last year