A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
☆188Mar 11, 2026Updated 2 months ago
Alternatives and similar repositories for kb_python
Users that are interested in kb_python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆121Mar 10, 2026Updated 2 months ago
- Tools for working with BUS files☆102May 27, 2025Updated 11 months ago
- Near-optimal RNA-Seq quantification☆760Mar 16, 2026Updated 2 months ago
- A tool to find sequencing data and metadata from public databases.☆598Aug 13, 2024Updated last year
- CellRank: dynamics from multi-view single-cell data☆449May 4, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for semi-automatic cell type classification☆476Updated this week
- CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology☆68Jul 8, 2023Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆28Nov 6, 2021Updated 4 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- scSNV Mapping tool for 10X Single Cell Data☆26Dec 19, 2025Updated 5 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆606Jun 26, 2025Updated 10 months ago
- 🧬 gget enables efficient querying of genomic reference databases☆1,123Updated this week
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆19Mar 31, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Gene Set Enrichment Analysis in Python☆696Apr 29, 2026Updated 3 weeks ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆151Dec 5, 2024Updated last year
- Differential expression analysis for single-cell RNA-seq data.☆206Oct 21, 2025Updated 7 months ago
- Convert between AnnData and SingleCellExperiment☆149Updated this week
- Comparison of single-cell normalization methods using multiple datasets with ground-truth labels☆19Dec 2, 2019Updated 6 years ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,623May 14, 2026Updated last week
- A scanpy extension to analyse single-cell TCR and BCR data.☆252May 11, 2026Updated last week
- Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction …☆495Apr 23, 2026Updated 3 weeks ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,452May 13, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- https://www.sc-best-practices.org☆1,194May 13, 2026Updated last week
- Two pass alignment for long reads☆22Mar 9, 2021Updated 5 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆20Jul 2, 2024Updated last year
- ☆11Dec 8, 2023Updated 2 years ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆471Jun 6, 2025Updated 11 months ago
- Python module to analyse CRISPR-based libraries☆14Apr 1, 2021Updated 5 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆44Sep 18, 2025Updated 8 months ago
- RNA velocity estimation in Python☆176Oct 7, 2025Updated 7 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆394May 6, 2026Updated 2 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆84Apr 22, 2026Updated 3 weeks ago
- 𝒫robabilistic modeling of RNA velocity ⬱☆49May 12, 2026Updated last week
- Package for fetching metadata and downloading data from SRA/ENA/GEO☆358Dec 9, 2025Updated 5 months ago
- A rust framework to make using alevin-fry even simpler☆66Updated this week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆310Mar 6, 2023Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆429Feb 4, 2026Updated 3 months ago
- miRTrace☆12Jun 14, 2023Updated 2 years ago