Alternatives and similar repositories for webatlas-app

Users that are interested in webatlas-app are comparing it to the libraries listed below

• haniffalab / webatlas-pipeline
  A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas
  ☆65Updated 3 months ago
• sagar87 / spatialproteomics
  Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…
  ☆38Updated last month
• nf-core / spatialxe
  ☆22Updated last week
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• nf-core / mcmicro
  An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
  ☆24Updated last week
• nf-core / molkart
  A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
  ☆13Updated last week
• saeyslab / napari-sparrow
  https://sparrow-pipeline.readthedocs.io/en/latest/
  ☆31Updated this week
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆56Updated last week
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆84Updated 3 months ago
• broadinstitute / celldega
  Spatial omics analysis and visualization library
  ☆20Updated this week
• nf-core / imcyto
  Image Mass Cytometry analysis pipeline
  ☆26Updated 4 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆24Updated last year
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆29Updated last year
• HiDiHlabs / ssam
  ☆27Updated last year
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆25Updated last week
• scverse / spatialdata-io
  ☆74Updated this week
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆43Updated this week
• estellad / SpatialExperimentIO
  Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.
  ☆16Updated last month
• Feanor007 / MESA
  A python package for Multiomics and Ecological Spatial Analysis (MESA)
  ☆21Updated 6 months ago
• scverse / spatialdata-notebooks
  ☆61Updated last week
• SydneyBioX / MoleculeExperiment
  ☆12Updated last year
• camlab-bioml / starling
  Segmentation error aware clustering for multiplexed imaging
  ☆19Updated 9 months ago
• Nanostring-Biostats / InSituType
  An R package for performing cell typing in SMI and other single cell data
  ☆42Updated 5 months ago
• HelenaLC / SpatialData
  ☆18Updated 5 months ago
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated last year
• pachterlab / concordex
  Identification of spatial homogeneous regions
  ☆21Updated 3 weeks ago
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆16Updated 4 years ago
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆31Updated 11 months ago
• BodenmillerGroup / imctools
  Tools to handle IMC data
  ☆23Updated 3 years ago
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆67Updated 2 weeks ago