haniffalab / webatlas-appLinks
An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.
☆14Updated last year
Alternatives and similar repositories for webatlas-app
Users that are interested in webatlas-app are comparing it to the libraries listed below
Sorting:
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆64Updated 2 weeks ago
- ☆29Updated last year
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆19Updated last week
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆12Updated last week
- ☆19Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆28Updated 2 weeks ago
- ☆54Updated this week
- Image Mass Cytometry analysis pipeline☆26Updated last month
- ☆27Updated 9 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated 3 weeks ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆29Updated last month
- ☆27Updated 9 months ago
- Identification of spatial homogeneous regions☆21Updated 6 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆47Updated this week
- Tools to handle IMC data☆23Updated 3 years ago
- Static plotting for spatialdata☆62Updated this week
- Probabilistic cell segmentation for in situ spatial transcriptomics☆105Updated this week
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 8 months ago
- An R package for performing cell typing in SMI and other single cell data☆37Updated last month
- ☆63Updated 2 weeks ago
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆15Updated 2 months ago
- ☆12Updated last year
- Single-cell spatial proteomics analysis that makes you happy!☆32Updated this week
- Python API and Jupyter widget for Vitessce☆49Updated this week
- Python package for Probe set selection for targeted spatial transcriptomics.☆38Updated last week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 9 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- Repository for storing prototype functionality implementations for the BKP☆30Updated this week
- A probabilistic cell typing algorithm for spatial transcriptomics.☆24Updated 3 weeks ago