An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.
☆15Nov 3, 2025Updated 8 months ago
Alternatives and similar repositories for webatlas-app
Users that are interested in webatlas-app are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆71Apr 24, 2026Updated 3 months ago
- Create web-based OME-Zarr galleries☆26Jul 7, 2026Updated 2 weeks ago
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆13Mar 11, 2024Updated 2 years ago
- Basic example of using OME-Zarr in a Nextflow pipeline☆21Jul 15, 2025Updated last year
- ☆19May 12, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆11Dec 7, 2022Updated 3 years ago
- Pydantic models for OME-NGFF☆24Sep 14, 2025Updated 10 months ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Dec 6, 2021Updated 4 years ago
- A web-based resource for the scientific visualization community to enhance reproducibility and facilitate testing and development of OME-…☆25Feb 14, 2026Updated 5 months ago
- A bioinformatics best-practice processing and quality control pipeline for Xenium and Artera data☆42Updated this week
- Raw format to OME-TIFF converter☆57Apr 24, 2026Updated 3 months ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- Reading HDF5 files with Zarr☆12Oct 5, 2021Updated 4 years ago
- Linked Data Interface (LINDI) - cloud-friendly access to NWB data☆17Mar 19, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- OME model (specification, code generator, implementation)☆17Jun 3, 2026Updated last month
- ☆22Jul 13, 2026Updated last week
- ☆49Jan 28, 2026Updated 5 months ago
- Single-cell Analysis of Perturbational Effects using Machine Learning☆19Oct 9, 2025Updated 9 months ago
- Weakly supervised learning uncovers phenotypic signatures in single-cell data☆41Jun 7, 2026Updated last month
- Nextflow version of Sopa - spatial omics pipeline and analysis☆19Updated this week
- Comprehensive pipeline for donor demultiplexing in single cell☆26Updated this week
- DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data☆25Jan 20, 2026Updated 6 months ago
- SPECTRA: Spectral framework for evaluation of biomedical AI models☆43May 28, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Schema.org Data Models for HTAN☆15Sep 4, 2025Updated 10 months ago
- ☆11Jul 8, 2024Updated 2 years ago
- ☆17Oct 29, 2025Updated 8 months ago
- Bio-Formats image file format to raw format converter☆110Jun 30, 2026Updated 3 weeks ago
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆90May 25, 2026Updated 2 months ago
- ☆38Dec 13, 2023Updated 2 years ago
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated 10 months ago
- An implementation of the Zarr storage format specification for chunked & compressed multidimensional arrays.☆26Apr 22, 2025Updated last year
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- litemind is a Python library designed to empower developers to build sophisticated conversational agents and tools. It provides a flexibl…☆18Apr 5, 2026Updated 3 months ago
- An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, a…☆21Updated this week
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 2 years ago
- A draft specification for the nifti-zarr format☆18Dec 5, 2025Updated 7 months ago
- A cross-platform binary storage format for sparse data, particularly sparse matrices.☆24Mar 4, 2026Updated 4 months ago
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- Generation of disentangled microenvironment-induced and intrinsic gene expression vectors from spatial transcriptomics data☆27Jul 3, 2026Updated 3 weeks ago