wanqingshao / TE_expression_in_scRNAseq
☆17Updated 4 years ago
Alternatives and similar repositories for TE_expression_in_scRNAseq:
Users that are interested in TE_expression_in_scRNAseq are comparing it to the libraries listed below
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated last month
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆14Updated 3 years ago
- ☆27Updated 3 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆23Updated 7 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆22Updated 2 months ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆23Updated last year
- ☆45Updated 7 months ago
- ☆16Updated 6 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆24Updated last year
- RNA editing tests☆17Updated 4 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆19Updated 3 years ago
- Codes associated with the Poran, Nötzel et al. paper titled "Single-cell RNA-seq reveals a signature of sexual commitment in malaria para…☆10Updated 7 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- ☆33Updated 10 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- ☆31Updated 5 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- ☆12Updated 8 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 4 years ago
- scripts for analyzing the CVDC data.☆17Updated 5 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Micro DNA identification☆22Updated 3 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 3 months ago