BIMIB-DISCo / LACELinks
LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution analyses for single-cell sequencing data, including longitudinal experiments. The tool also allows to annotate and retrieve the relevant variants based on user-defined criteria.
☆15Updated 4 months ago
Alternatives and similar repositories for LACE
Users that are interested in LACE are comparing it to the libraries listed below
Sorting:
- Explore the cancer relevance of your gene list☆51Updated 6 months ago
- scover☆23Updated last year
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- ☆16Updated 2 years ago
- Gene Expression Decomposition and Integration☆19Updated 6 months ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- ☆12Updated 5 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last week
- ☆12Updated 4 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- ☆22Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- A single cell sequencing read simulator.☆33Updated 10 months ago
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- ☆23Updated 3 years ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ☆20Updated last year
- ☆17Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Collection of R functions used in the Hochwagen Lab☆12Updated 3 weeks ago
- ☆14Updated 6 years ago
- cancereffectsizeR: Estimate somatic mutation rates and quantify selection in cancer☆18Updated last month