BIMIB-DISCo / LACELinks
LACE 2.0 is a new release of the LACE R Bioconductor package, which provides an interactive user interface to perform clonal evolution analyses for single-cell sequencing data, including longitudinal experiments. The tool also allows to annotate and retrieve the relevant variants based on user-defined criteria.
☆15Updated this week
Alternatives and similar repositories for LACE
Users that are interested in LACE are comparing it to the libraries listed below
Sorting:
- scover☆23Updated last year
- A single cell sequencing read simulator.☆33Updated last year
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- ☆16Updated 3 years ago
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- Inferring gene co-expression networks from single cell gene expression data☆28Updated 3 years ago
- Explore the cancer relevance of your gene list☆52Updated last month
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated last week
- Bead-based single-cell atac processing☆33Updated 3 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated this week
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- R package for gene selection using k-NN graphs.☆13Updated 2 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- ☆12Updated 6 years ago
- kallisto index tag extractor☆20Updated 6 years ago
- Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome☆22Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago
- SCASA: Single cell transcript quantification tool☆22Updated last year
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆12Updated 3 years ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- ☆17Updated 2 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago