Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq at locus- or subfamily-level
☆25Aug 25, 2026Updated this week
Alternatives and similar repositories for irescue
Users that are interested in irescue are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆33Dec 11, 2025Updated 8 months ago
- Tool comparison for detecting differentially expressed individual transposable elements☆12Jan 7, 2022Updated 4 years ago
- Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing☆25Oct 28, 2025Updated 10 months ago
- ☆35Jun 12, 2024Updated 2 years ago
- R package for single-cell comparative regulatory analysis☆12Jun 26, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆120Apr 24, 2024Updated 2 years ago
- ☆10Jan 29, 2020Updated 6 years ago
- Software for Quantifying Interspersed Repeat Expression☆69Jun 20, 2022Updated 4 years ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆92Jul 16, 2026Updated last month
- Bayesian model for RNA velocity estimation of periodic manifolds☆35Jun 25, 2024Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆25Sep 5, 2024Updated last year
- Estimate locus specific human LINE-1 expression.☆42Jan 19, 2026Updated 7 months ago
- ☆14Apr 2, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆27Feb 22, 2025Updated last year
- ☆28Jul 4, 2026Updated last month
- ☆13Dec 1, 2021Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated last month
- Group Technical Effects (GTE)☆16Oct 18, 2025Updated 10 months ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆41Jan 14, 2025Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆37Apr 17, 2026Updated 4 months ago
- ☆20May 8, 2026Updated 3 months ago
- ☆21Nov 15, 2020Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- Drug Response Estimation from single-cell Expression Profiles☆13Jan 5, 2024Updated 2 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 9 years ago
- ☆15Apr 11, 2024Updated 2 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆14Mar 12, 2021Updated 5 years ago
- Algorithm to detect germline and de novo transposon insertions☆38Aug 24, 2026Updated last week
- ☆12Jan 8, 2026Updated 7 months ago
- Multivariate stochastic modeling for transcriptional dynamics with cell-specific latent time using SDEvelo☆21Jan 28, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆16Jan 16, 2024Updated 2 years ago
- https://molecular-neurogenetics.github.io/truster/☆12Jul 14, 2025Updated last year
- R tools for analysis and visualization of single-cell subclustering data☆19Updated this week
- Landscape Single Cell Entropy☆23Aug 24, 2020Updated 6 years ago
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 5 years ago
- ☆20Feb 17, 2021Updated 5 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆89Mar 20, 2025Updated last year