LungCellAtlas / scRNAseq_pipelinesLinks
Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
☆39Updated 5 years ago
Alternatives and similar repositories for scRNAseq_pipelines
Users that are interested in scRNAseq_pipelines are comparing it to the libraries listed below
Sorting:
- ☆61Updated 2 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆29Updated 3 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- Functional Inference of Gene Regulation☆49Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- ☆37Updated 3 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated 2 months ago
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- ☆50Updated 5 years ago
- scWGCNA☆61Updated 3 years ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 4 years ago
- Integration of gut cell atlases☆32Updated 2 months ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆30Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆25Updated 8 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆26Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago
- ☆39Updated 4 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 10 months ago
- ☆40Updated 2 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆21Updated 2 years ago
- ☆39Updated 4 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Accurate and fast cell marker gene identification with COSG☆54Updated 3 weeks ago
- ☆10Updated 2 years ago