LungCellAtlas / scRNAseq_pipelinesLinks
Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
☆39Updated 5 years ago
Alternatives and similar repositories for scRNAseq_pipelines
Users that are interested in scRNAseq_pipelines are comparing it to the libraries listed below
Sorting:
- ☆63Updated 2 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- ☆37Updated 3 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆44Updated 2 years ago
- ☆50Updated 6 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆81Updated 6 months ago
- Integration of gut cell atlases☆33Updated 3 months ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆28Updated last year
- Functional Inference of Gene Regulation☆51Updated last year
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆25Updated last week
- Spatial transcriptomics of heart tissue☆28Updated 3 years ago
- scWGCNA☆61Updated 3 years ago
- Code used to process the data of the HBCA project☆32Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆36Updated 3 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated last year
- Collection of scripts for analysis of pan fetal immune atlas☆29Updated 3 years ago
- Unsupervised Inference of Developmental Directions for Single Cells☆23Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆31Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Single cell RNA-seq analysis bundle☆37Updated 6 years ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Updated 11 months ago
- Method for de novo mutation calling from droplet based single cell RNA seq data☆14Updated 4 years ago
- Cell age determination by scATAC-seq and bulk-ATAC-seq☆32Updated last week
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆22Updated 2 years ago
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆31Updated last year
- Draw phylogenetic trees of tumor evolution☆87Updated 2 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Updated 2 years ago