A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
☆23Apr 16, 2019Updated 6 years ago
Alternatives and similar repositories for Mfuzz_RNAseq
Users that are interested in Mfuzz_RNAseq are comparing it to the libraries listed below
Sorting:
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆34Sep 14, 2024Updated last year
- ☆40Aug 29, 2025Updated 6 months ago
- R code in workflow of chip-seq analysis☆11Nov 20, 2019Updated 6 years ago
- An R package to calculate Dynamical Network Biomarkers (DNB).☆10Sep 16, 2022Updated 3 years ago
- Source code and data for "Pan-cancer analysis of bi-allelic alterations in homologous recombination (HR) DNA repair genes" ; See manuscri…☆13May 26, 2017Updated 8 years ago
- Frailty analysis including FRIGHT age and AFRAID clock☆12Apr 3, 2020Updated 5 years ago
- ☆13Apr 4, 2023Updated 2 years ago
- ☆13Jun 24, 2019Updated 6 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13May 2, 2019Updated 6 years ago
- ☆11Jun 11, 2023Updated 2 years ago
- simpler single cell RNAseq data Visualization☆10Feb 28, 2025Updated last year
- The code and analyses accompanying the manuscript “MetaMap: An atlas of metatranscriptomic reads in human disease-related RNA-seq data”.☆12Nov 28, 2018Updated 7 years ago
- BulkSignalR☆27Jul 24, 2025Updated 7 months ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- Vaeda method for computational doublet annotation☆19Feb 1, 2026Updated last month
- ☆12Mar 5, 2024Updated 2 years ago
- BioCarta pathway images☆11Jan 30, 2026Updated last month
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 4 years ago
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 3 months ago
- Learning meaningful representations of genes☆21Jul 7, 2025Updated 8 months ago
- ☆13Sep 29, 2023Updated 2 years ago
- RPKM for RNASeq counts☆16Oct 24, 2020Updated 5 years ago
- RNA-Seq pipeline☆36Jul 22, 2015Updated 10 years ago
- scAB detects multiresolution cell states with clinical significance☆21Nov 14, 2022Updated 3 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆19Jul 31, 2024Updated last year
- ☆18Nov 2, 2023Updated 2 years ago
- One-step to Cluster and Visualize Gene Expression Matrix☆360Mar 7, 2026Updated last week
- causal TWAS (cTWAS)☆47Updated this week
- A Shiny tool to define the cell-type of action by integrating single cell expression data with GWAS☆12Nov 1, 2018Updated 7 years ago
- ☆17Jul 13, 2024Updated last year
- deconvolution for RNAseq and bisulfite sequencing☆11Aug 17, 2020Updated 5 years ago
- Transcription Factor Target Finder (TFTF) is an R package designed for predicting transcription factor target genes and predicting upstre…☆26Feb 4, 2026Updated last month
- STAG: Species Tree from All Genes☆35Dec 10, 2018Updated 7 years ago
- ☆22Apr 28, 2022Updated 3 years ago
- Murine version of MCP-counter, a tool to estimate the immune and stromal composition of heterogeneous tissue, from transcriptomic data☆12Jun 30, 2022Updated 3 years ago
- scGRO-seq analyses codes☆13Jan 9, 2024Updated 2 years ago
- 🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package☆54Jan 21, 2026Updated 2 months ago
- Deconvolution of spatial transcriptomics at single-cell resolution☆20Sep 19, 2024Updated last year
- R package for SIGMA, a clusterability measure for scRNA-seq data☆12Dec 15, 2021Updated 4 years ago