a-velt / Mfuzz_RNAseqLinks
A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.
☆22Updated 6 years ago
Alternatives and similar repositories for Mfuzz_RNAseq
Users that are interested in Mfuzz_RNAseq are comparing it to the libraries listed below
Sorting:
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- ☆26Updated 2 years ago
- ☆23Updated 4 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- ☆11Updated 6 months ago
- ☆17Updated last year
- An R package for time course sequencing data analysis☆20Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- Extract Sequence from Genome According to Annotation File☆38Updated 7 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18Updated 4 years ago
- West Coast Dream Team Whole Genome Bisulfite Sequencing☆15Updated 3 weeks ago
- ☆18Updated 5 years ago
- ☆20Updated 2 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- ☆15Updated 2 years ago
- ☆12Updated 2 years ago
- ☆23Updated 9 months ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated 3 weeks ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 6 months ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆20Updated last month
- ☆34Updated 3 weeks ago
- Micro DNA identification☆24Updated 4 years ago
- Statistically Significant loops from HiChIP data☆46Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Updated 3 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago