jlaffy / infercnaLinks
Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
☆41Updated last year
Alternatives and similar repositories for infercna
Users that are interested in infercna are comparing it to the libraries listed below
Sorting:
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- A tool for removing doublets from single-cell RNA-seq data☆74Updated 4 years ago
- A R package for advanced single cell data viz☆67Updated last year
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆33Updated last year
- R Package for Single-Cell Dataset Processing and Visualization☆63Updated 3 years ago
- ☆62Updated 5 years ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆33Updated 4 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆85Updated last week
- ☆50Updated 5 years ago
- ☆63Updated 4 years ago
- A pipeline for scRNA-seq data analysis☆14Updated 3 months ago
- Aligning gene expression trajectories of single-cell reference and query systems☆68Updated 8 months ago
- ☆41Updated 4 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆17Updated last month
- scGSVA: Perform GSVA for single cell RNA seq☆62Updated 8 months ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Code repository for single cell RNA-seq☆35Updated 4 years ago
- Inferring CNV data from single cell ATAC seq☆23Updated 2 weeks ago
- MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via…☆22Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆31Updated 7 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Methods for decontamination of single cell data☆47Updated 4 months ago
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆62Updated 3 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆31Updated last year
- Functions for single cell data analysis☆32Updated 4 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- Draw phylogenetic trees of tumor evolution☆80Updated last year
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago