cole-trapnell-lab / pseudospace
☆12Updated 5 years ago
Alternatives and similar repositories for pseudospace:
Users that are interested in pseudospace are comparing it to the libraries listed below
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Marker gene selection from scRNA-seq data☆15Updated 4 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- Bead-based single-cell atac processing☆32Updated 3 years ago
- ☆23Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- ☆33Updated 11 months ago
- This repository contains HCA Benchmarking codes☆26Updated 5 years ago
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated 2 years ago
- Identified novel mouse spermatogenesis biomarkers based on single-cell RNA sequencing data☆11Updated 2 years ago
- Human brain, >200,000 nuclei☆24Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆21Updated 9 months ago
- ☆12Updated 3 years ago
- Cell type purification by single-cell transcriptome-trained sorting☆14Updated 5 years ago
- ☆12Updated 9 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆21Updated 4 months ago
- corto (Correlation Tool): an R package to generate correlation-based DPI networks☆20Updated 2 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- ☆47Updated 8 months ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 5 months ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆17Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆31Updated last week
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- SCASA: Single cell transcript quantification tool☆21Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Pipeline to find transcription factor footprints in DNase-seq or ATAC-seq datasets☆12Updated 6 years ago
- Lung cancer 10X analysis☆11Updated 4 years ago