Alternatives and similar repositories for MATES

Users that are interested in MATES are comparing it to the libraries listed below

• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆19Updated this week
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆25Updated last year
• bvaldebenitom / SoloTE
  ☆32Updated last year
• stjude / ROSE
  ROSE: RANK ORDERING OF SUPER-ENHANCERS
  ☆51Updated last year
• wenweixiong / MARVEL
  ☆51Updated last year
• lkmklsmn / MitoTrace
  ☆18Updated last year
• ElkonLab / scAPA
  This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.
  ☆23Updated 3 years ago
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆22Updated last year
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆18Updated 2 years ago
• gxiaolab / scAllele
  ☆38Updated 2 weeks ago
• ay-lab / ATACProc
  ATAC-seq processing pipeline
  ☆34Updated 3 years ago
• shengxin321 / HumanKidney_eQTL_and_snATAC-seq
  codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data
  ☆19Updated 4 years ago
• ay-lab / FitHiChIP
  Statistically Significant loops from HiChIP data
  ☆44Updated last year
• KChen-lab / Monopogen
  SNV calling from single cell sequencing
  ☆106Updated 10 months ago
• quadbio / RNAseq_tutorial
  ☆29Updated 10 months ago
• YiPeng-Gao / scDaPars
  Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)
  ☆17Updated 4 years ago
• 3UTR / DaPars2
  Dynamics analysis of Alternative PolyAdenylation from RNA-seq
  ☆61Updated 2 years ago
• UPSUTER / GEMLI
  ☆32Updated 7 months ago
• gerstung-lab / MutationTimeR
  An R package to time somatic mutations
  ☆62Updated 4 years ago
• ucsffrancislab / REdiscoverTE
  ☆11Updated last year
• XiDsLab / scFusion
  ☆21Updated 3 years ago
• gxiaolab / REDITs
  RNA editing tests
  ☆17Updated 4 years ago
• sandberg-lab / Smart-seq3
  Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).
  ☆54Updated 3 years ago
• TianLab-Bioinfo / scMAGIC
  A robust and accurate cell type classifier for single cell RNA-seq data
  ☆17Updated 2 years ago
• McGranahanLab / ImmuneLENS
  ☆14Updated 6 months ago
• WRui / Post_Implantation
  ☆27Updated 4 years ago
• omicsCore / scTyper
  scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data
  ☆31Updated 2 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆43Updated 4 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago