mcgilldinglab / MATESLinks
A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
☆28Updated 3 months ago
Alternatives and similar repositories for MATES
Users that are interested in MATES are comparing it to the libraries listed below
Sorting:
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated 11 months ago
- ☆32Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 3 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆50Updated 11 months ago
- single-cell clustering based on alternative splicing landscapes☆21Updated last year
- ☆17Updated last year
- ☆49Updated 11 months ago
- ☆28Updated 8 months ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆21Updated 3 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- ATAC-seq processing pipeline☆33Updated 3 years ago
- ☆34Updated last year
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- ☆27Updated 4 years ago
- ☆32Updated 5 months ago
- Tutorial Website☆59Updated 4 years ago
- Dynamics analysis of Alternative PolyAdenylation from RNA-seq☆61Updated last year
- A robust and accurate cell type classifier for single cell RNA-seq data☆16Updated 2 years ago
- ☆33Updated 6 years ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆16Updated 2 years ago
- Analysis of Paired-Tag datasets☆42Updated last year
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆10Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆13Updated 2 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆17Updated 4 years ago