A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data
☆32Dec 11, 2025Updated 7 months ago
Alternatives and similar repositories for MATES
Users that are interested in MATES are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆23Apr 16, 2026Updated 3 months ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jan 23, 2026Updated 5 months ago
- Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing☆25Oct 28, 2025Updated 8 months ago
- Software for Quantifying Interspersed Repeat Expression☆68Jun 20, 2022Updated 4 years ago
- ☆34Jun 12, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆120Apr 24, 2024Updated 2 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Sep 5, 2024Updated last year
- A developed pipeline for expressed endogenous retrovirus identification.☆17Oct 9, 2024Updated last year
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Jul 16, 2025Updated last year
- Tool comparison for detecting differentially expressed individual transposable elements☆11Jan 7, 2022Updated 4 years ago
- Quantification of transposable element expression using RNA-seq☆92Feb 8, 2024Updated 2 years ago
- Detecting and dissecting anomalous anatomic regions in spatial transcriptomics with STANDS☆11May 18, 2026Updated 2 months ago
- Estimate the cis-regulatory activity of transposable element (TEs) subfamilies☆12Dec 15, 2023Updated 2 years ago
- UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturbations.☆58Jul 10, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Jan 29, 2020Updated 6 years ago
- Estimate locus specific human LINE-1 expression.☆40Jan 19, 2026Updated 6 months ago
- Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data☆39May 31, 2026Updated last month
- Code and data sharing of Liu et al. 2023 manuscript☆17Apr 18, 2023Updated 3 years ago
- ☆14Apr 2, 2025Updated last year
- A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative mod…☆26Jun 7, 2025Updated last year
- An R package for fast topic inference to identify tissue architecture in multiplexed images☆18Jun 5, 2026Updated last month
- ☆10Oct 15, 2025Updated 9 months ago
- ☆12Jan 8, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆28Jul 5, 2020Updated 6 years ago
- a simple R data package for curated cancer pathway-specific gene lists☆13Mar 31, 2020Updated 6 years ago
- ☆24Jul 9, 2025Updated last year
- Deconvolution of spatial transcriptomics at single-cell resolution☆22Mar 25, 2026Updated 3 months ago
- ☆18Dec 4, 2025Updated 7 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆12May 12, 2025Updated last year
- ☆13Sep 20, 2024Updated last year
- A High Effect Marker Gene Search Tool for Single-cell RNA-seq Analysis☆35Sep 14, 2024Updated last year
- scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells…☆21May 13, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆21Nov 15, 2020Updated 5 years ago
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 3 months ago
- Toolbox of the Human Neural Organoid Cell Atlas☆35Jul 13, 2026Updated last week
- ☆14Dec 3, 2024Updated last year
- ☆18Sep 24, 2024Updated last year
- ☆11Feb 11, 2021Updated 5 years ago