Alternatives and similar repositories for CUIMC-NYP_COVID_autopsy_lung

Users that are interested in CUIMC-NYP_COVID_autopsy_lung are comparing it to the libraries listed below

• franklinhuanglab / scRNA-seq-Analysis-of-Prostate-Cancer-Samples

  View on GitHub
  Code for the manuscript "Single-cell analysis of human primary prostate cancer reveals the heterogeneity of tumor-associated epithelial c…
  ☆25Jun 21, 2022Updated 3 years ago
• Coolgenome / GastricCancer

  View on GitHub
  ☆12Mar 5, 2024Updated last year
• bischofp / single_cell_lung_adenocarcinoma

  View on GitHub
  ☆32Jan 26, 2022Updated 4 years ago
• Dragonlongzhilin / RenalTumor

  View on GitHub
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆81Oct 29, 2024Updated last year
• dibbelab / singlecell_bcatlas

  View on GitHub
  Breast Cancer Single Cell Atlas
  ☆12Mar 31, 2022Updated 3 years ago
• bioinformatics-inca / MyeloidDerivedCells_in_TME

  View on GitHub
  ☆16May 21, 2024Updated last year
• lihaowhusos / TLS_in_HNSCC

  View on GitHub
  TLS in HNSCC
  ☆17Apr 24, 2025Updated 9 months ago
• AweKevin / TIIClnc

  View on GitHub
  Machine learning-based identification of tumor-infiltrating immune cell-associated lncRNAs for improving outcomes and immunotherapy respo…
  ☆14Sep 7, 2022Updated 3 years ago
• chriscainx / gastric-cancer

  View on GitHub
  ☆16Mar 2, 2023Updated 2 years ago
• mousepixels / sanbomics_scripts

  View on GitHub
  scripts and notebooks from sanbomics
  ☆464Nov 25, 2024Updated last year
• youqiongye / CRC_scRNAseq

  View on GitHub
  ☆49Feb 16, 2022Updated 4 years ago
• Lan-lab / sc-GC

  View on GitHub
  ☆32Aug 24, 2022Updated 3 years ago
• mbourgey / scRNA_GBM

  View on GitHub
  analysis script for GBM single cell RNA seq data
  ☆22May 26, 2021Updated 4 years ago
• parveendabas / GBMatlas

  View on GitHub
  ☆18Oct 4, 2022Updated 3 years ago
• JunyueCaoLab / EasySci

  View on GitHub
  Computational pipeline to process EasySci-RNA data.
  ☆22Jan 17, 2024Updated 2 years ago
• jbryois / scRNA_disease

  View on GitHub
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Apr 24, 2020Updated 5 years ago
• compbioNJU / scPDAC

  View on GitHub
  R code used to analyze single cell PDAC data
  ☆41Jun 29, 2024Updated last year
• Xiaxy-XuLab / PanCAF

  View on GitHub
  ☆37Sep 20, 2022Updated 3 years ago
• vincenthahaut / FLASH-Seq

  View on GitHub
  ☆10May 31, 2022Updated 3 years ago
• JianfengXu93 / CHALM

  View on GitHub
  Cell Heterogeneity Accounted cLonal Methylation (CHALM)
  ☆10Jul 6, 2021Updated 4 years ago
• strangephone / EENT-ONB

  View on GitHub
  scRNA-seq analysis of EENT-ONB
  ☆22Jan 14, 2024Updated 2 years ago
• ncborcherding / ccRCC

  View on GitHub
  Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinoma
  ☆21Aug 15, 2021Updated 4 years ago
• dengchunyu / TIP

  View on GitHub
  The source code of web server TIP, including example data.
  ☆20Mar 28, 2019Updated 6 years ago
• ccruizm / GBmap

  View on GitHub
  Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolu…
  ☆65Dec 7, 2022Updated 3 years ago
• Olaniru / human-fetal-pancreas

  View on GitHub
  analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages
  ☆10Jan 30, 2023Updated 3 years ago
• gustaveroussy / FG-Lab

  View on GitHub
  ☆13Updated this week
• woolf-wu / GEO

  View on GitHub
  ☆13Mar 17, 2019Updated 6 years ago
• scCOVID-19 / COVIDPBMC

  View on GitHub
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆41Dec 21, 2021Updated 4 years ago
• aliceygao / pan-Fibroblast

  View on GitHub
  ☆57Aug 8, 2024Updated last year
• chloelulu / scMayoMap

  View on GitHub
  ☆25Oct 25, 2023Updated 2 years ago
• qqwang-berkeley / JUM

  View on GitHub
  A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns
  ☆30Apr 10, 2023Updated 2 years ago
• HadrienG / nanoflow

  View on GitHub
  De novo assembly of nanopore reads using nextflow
  ☆20Aug 5, 2020Updated 5 years ago
• TangFei965 / pan-NK

  View on GitHub
  These are scripts for pan-cacner NK cells analyses.
  ☆76Aug 18, 2023Updated 2 years ago
• cyang235 / smooth-seq

  View on GitHub
  A pipeline for Smooth-seq data analysis.
  ☆10Sep 23, 2021Updated 4 years ago
• dekkerlab / matrix_paper

  View on GitHub
  Scripts and notebooks used in Akgol Oksuz et al. paper
  ☆11Jan 18, 2021Updated 5 years ago
• HLee-Six / colon_microbiopsies

  View on GitHub
  Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"
  ☆11Mar 21, 2021Updated 4 years ago
• Japrin / sscVis

  View on GitHub
  simpler single cell RNAseq data Visualization
  ☆10Feb 28, 2025Updated 11 months ago
• klarman-cell-observatory / covid19-autopsy

  View on GitHub
  ☆11May 6, 2021Updated 4 years ago
• sims-lab / CapCruncher

  View on GitHub
  Analysis tool for NG-Capture-C, Tri-C and Tiled-C data
  ☆10Oct 13, 2025Updated 4 months ago