dynverse / anndataLinks
Annotated multivariate observation data in R
☆48Updated last month
Alternatives and similar repositories for anndata
Users that are interested in anndata are comparing it to the libraries listed below
Sorting:
- AnnData interoperability in R☆84Updated this week
- Cell type pipes for R☆51Updated last year
- Latent Embedding Multivariate Regression☆92Updated 7 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 6 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆28Updated 3 months ago
- Toolkit for Single-Cell Velocity☆58Updated last week
- Gene regulatory network containing signed transcription factor-target gene interactions☆84Updated last month
- From geospatial to spatial -omics☆95Updated 4 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆33Updated 2 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆77Updated 3 years ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆33Updated last month
- An r package that works as a wrapper to homologene☆46Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last week
- R package for single cell and other data analysis using diffusion maps☆88Updated 7 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆53Updated 10 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆70Updated 11 months ago
- R API and htmlwidget for Vitessce☆41Updated 9 months ago
- R library to normalize cytometry data☆37Updated 3 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated last month
- An R-based interface for loom files☆66Updated 5 years ago
- Mixed-effect model to test differences in cell type proportions from single-cell data, in R☆106Updated this week
- Coarse-graining of large single-cell RNA-seq data into metacells☆85Updated last week
- Single-cell analysis with non-negative matrix factorization☆45Updated last week
- ☆88Updated last week
- R client for the REACTOME Analysis Service for comparative multi-omics gene set analysis☆27Updated 7 months ago
- Normalize CITEseq Data☆66Updated 3 months ago
- .h5mu files interface for Seurat☆32Updated last year
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆19Updated this week