dynverse / anndataLinks
Annotated multivariate observation data in R
☆50Updated 4 months ago
Alternatives and similar repositories for anndata
Users that are interested in anndata are comparing it to the libraries listed below
Sorting:
- AnnData interoperability in R☆119Updated this week
- Cell type pipes for R☆52Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆55Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 5 months ago
- R package for single cell and other data analysis using diffusion maps☆88Updated 11 months ago
- An R-based interface for loom files☆67Updated 5 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆29Updated 2 months ago
- Latent Embedding Multivariate Regression☆95Updated 11 months ago
- An r package that works as a wrapper to homologene☆46Updated last year
- From geospatial to spatial -omics☆98Updated last month
- ☆94Updated last month
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 2 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 10 months ago
- Collection of cell type reference datasets.☆61Updated last year
- Normalize CITEseq Data☆66Updated 6 months ago
- ☆44Updated 11 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆73Updated last week
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆45Updated 3 weeks ago
- R API and htmlwidget for Vitessce☆43Updated 2 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- .h5mu files interface for Seurat☆31Updated last year
- Unified access to several second-generation deconvolution methods☆79Updated 3 weeks ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆55Updated 4 months ago
- ☆41Updated 2 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆129Updated 3 months ago
- Toolkit for Single-Cell Velocity☆59Updated 3 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago