dynverse / anndataLinks
Annotated multivariate observation data in R
☆47Updated last week
Alternatives and similar repositories for anndata
Users that are interested in anndata are comparing it to the libraries listed below
Sorting:
- AnnData interoperability in R☆78Updated this week
- Cell type pipes for R☆51Updated last year
- An r package that works as a wrapper to homologene☆46Updated last year
- Using self-organizing maps for visualization and interpretation of cytometry data☆28Updated 2 months ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated 5 months ago
- Toolkit for Single-Cell Velocity☆56Updated 5 months ago
- Latent Embedding Multivariate Regression☆90Updated 6 months ago
- ☆47Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆52Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆79Updated last week
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- ☆41Updated 4 years ago
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆19Updated last week
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- ☆41Updated 4 years ago
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last month
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated last year
- .h5mu files interface for Seurat☆30Updated last year
- From geospatial to spatial -omics☆93Updated 2 months ago
- An R-based interface for loom files☆66Updated 4 years ago
- Multiview Intercellular SpaTial modeling framework☆56Updated last year
- ☆50Updated 7 years ago
- ☆48Updated 3 weeks ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆33Updated 11 months ago
- Framework for sensitive DE testing (using neighbourhoods)☆68Updated 10 months ago
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆74Updated 2 years ago
- R package for single cell and other data analysis using diffusion maps☆87Updated 6 months ago
- Explore and share your scRNAseq clustering results☆50Updated last year
- R package for specialised analysis of single cell data☆38Updated 2 years ago