dynverse / anndataLinks
Annotated multivariate observation data in R
☆50Updated 2 months ago
Alternatives and similar repositories for anndata
Users that are interested in anndata are comparing it to the libraries listed below
Sorting:
- AnnData interoperability in R☆93Updated this week
- Cell type pipes for R☆51Updated last year
- From geospatial to spatial -omics☆95Updated last week
- R package for single cell and other data analysis using diffusion maps☆88Updated 9 months ago
- Latent Embedding Multivariate Regression☆94Updated 9 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 3 months ago
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆54Updated last year
- Toolkit for Single-Cell Velocity☆58Updated last month
- An r package that works as a wrapper to homologene☆46Updated last year
- R library to normalize cytometry data☆37Updated 4 months ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆29Updated 3 weeks ago
- R package for specialised analysis of single cell data☆38Updated 2 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 8 months ago
- An R-based interface for loom files☆67Updated 5 years ago
- ☆89Updated last month
- Normalize CITEseq Data☆66Updated 4 months ago
- A unified interface to spatial transcriptomics deconvolution tools☆43Updated 3 weeks ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆37Updated 2 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago
- Collection of cell type reference datasets.☆59Updated last year
- Framework for sensitive DE testing (using neighbourhoods)☆70Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆41Updated 3 years ago
- Single-cell analysis with non-negative matrix factorization☆45Updated last month
- Unified access to several second-generation deconvolution methods☆73Updated 3 weeks ago
- A post-clustering differential expression (DE) method robust to false-positive inflation caused by double dipping☆28Updated last month
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated 11 months ago
- Extension of SpatialExperiment with sf☆55Updated last week
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆63Updated 3 weeks ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- ☆24Updated 3 months ago