Annotated multivariate observation data in R
☆54Apr 1, 2026Updated 4 months ago
Alternatives and similar repositories for anndata
Users that are interested in anndata are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A performant scientific image visualization system.☆36Updated this week
- SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data☆13Mar 13, 2022Updated 4 years ago
- A python port of the R package SCTransform:☆21Jul 10, 2021Updated 5 years ago
- Python implementation of Gene Trajectory☆30Sep 4, 2024Updated last year
- ☆51Jul 22, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆85Jul 24, 2026Updated 2 weeks ago
- AnnData interoperability in R☆194Updated this week
- ☆74May 28, 2025Updated last year
- ☆67May 17, 2026Updated 2 months ago
- Multimodal Data (.h5mu) implementation for Python☆129Updated this week
- Single Cell Consensus Clustering with Speed☆24Dec 12, 2022Updated 3 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆34May 19, 2026Updated 2 months ago
- machine-readable file format for genomic library sequence and structure☆130Jul 15, 2026Updated 3 weeks ago
- Slides and Notebooks for scverse 2024☆16Sep 24, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆104Feb 26, 2025Updated last year
- gfftools - Galaxy toolshed repository☆15Sep 13, 2017Updated 8 years ago
- COMUNET: a tool to explore and visualize intercellular communication☆13Apr 15, 2020Updated 6 years ago
- ☆30Oct 4, 2024Updated last year
- ITK IO for images stored in OME-Zarr format.☆11Sep 4, 2025Updated 11 months ago
- Python package to perform normalization and variance-stabilization of single-cell data☆28Jul 17, 2025Updated last year
- ☆17Jan 6, 2025Updated last year
- Methods for detecting doublets in single-cell sequencing data☆259Jul 7, 2026Updated last month
- muon is a multimodal omics Python framework☆278Aug 3, 2026Updated last week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Python implementation of the Slingshot pseudotime algorithm☆77Oct 28, 2025Updated 9 months ago
- A tool for semi-automatic cell type classification☆500May 22, 2026Updated 2 months ago
- Annotated data.☆764Updated this week
- Visualising data frames as funky heatmaps 📊☆201Dec 12, 2025Updated 7 months ago
- Read fcs files.☆12Nov 13, 2025Updated 8 months ago
- Cell-type Relationship Analysis Workflow Done Across Distances☆42Nov 18, 2025Updated 8 months ago
- ☆15Jan 22, 2026Updated 6 months ago
- A geometry engine interface for 'grid' grobs☆12Aug 30, 2024Updated last year
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆115Aug 13, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 5 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆89Nov 16, 2025Updated 8 months ago
- Dataset distribution for Seurat☆158Mar 6, 2025Updated last year
- ☆14Apr 17, 2025Updated last year
- Inference of cell-cell communication from single-cell RNAseq data☆48Apr 21, 2025Updated last year
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆98Apr 30, 2026Updated 3 months ago
- Gene set scoring for single-cell data☆203Apr 29, 2026Updated 3 months ago