drisso / SingleCellExperimentLinks
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
☆75Updated 6 months ago
Alternatives and similar repositories for SingleCellExperiment
Users that are interested in SingleCellExperiment are comparing it to the libraries listed below
Sorting:
- Clone of the Bioconductor repository for the scater package.☆96Updated this week
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆66Updated 4 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆126Updated 8 months ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆70Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- An R interface to enrichR☆93Updated 11 months ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆46Updated 3 months ago
- Normalize CITEseq Data☆66Updated 2 months ago
- Content for the OSCA Book.☆66Updated 2 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- Toolkit for Single-Cell Velocity☆59Updated 6 months ago
- ☆55Updated 5 years ago
- cytofkit: an integrated flow/mass cytometry data analysis pipeline☆59Updated 5 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆128Updated 2 months ago
- An R-based interface for loom files☆67Updated 5 years ago
- R Codebase for BISCUIT: Infinite Mixture Model to cluster and impute single cells.☆66Updated 7 years ago
- Explore and share your scRNAseq clustering results☆50Updated 2 years ago
- Linear trajectory inference for single-cell RNA-seq☆61Updated last month
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 3 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆96Updated 5 years ago
- Clone of the Bioconductor repository for the scran package.☆46Updated last year
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 4 months ago
- An r package that works as a wrapper to homologene☆48Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated last month
- R package for single cell and other data analysis using diffusion maps☆92Updated 2 months ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 5 years ago
- PHATE dimensionality reduction method implemented in R☆81Updated 4 years ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆69Updated last month