Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
☆76Mar 24, 2026Updated 2 weeks ago
Alternatives and similar repositories for SingleCellExperiment
Users that are interested in SingleCellExperiment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Clone of the Bioconductor repository for the scater package.☆95Jan 12, 2026Updated 2 months ago
- Simple simulation of single-cell RNA sequencing data☆233Jan 12, 2026Updated 2 months ago
- Bioconductor facilities for parallel evaluation☆69Oct 30, 2025Updated 5 months ago
- A container (S4 class) for matrix-like assays☆36Feb 5, 2026Updated 2 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆48Sep 18, 2025Updated 6 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆11Sep 5, 2018Updated 7 years ago
- R/shiny interface for interactive visualization of data in SummarizedExperiment objects☆230Jan 14, 2026Updated 2 months ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Computable build reports, package metadata, and download stats from the Bioconductor project☆22Mar 13, 2026Updated 3 weeks ago
- Develop and host GitHub actions for Bioconductor☆11Apr 22, 2021Updated 4 years ago
- a pipeline for single cell RNA-seq data analysis☆67Dec 11, 2023Updated 2 years ago
- Efficiently compute robust markers across single-cell datasets☆12Apr 21, 2021Updated 4 years ago
- A unified framework for working transparently with on-disk and in-memory array-like datasets☆28Mar 31, 2026Updated last week
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆87Sep 17, 2025Updated 6 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 2 years ago
- Moderator Templates for https://www.biostars.org/☆11Apr 15, 2021Updated 4 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆293Jun 17, 2025Updated 9 months ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Jul 7, 2023Updated 2 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Mar 13, 2025Updated last year
- Tools and methods for analysis of single cell assay data in R☆262Oct 17, 2025Updated 5 months ago
- Content for the OSCA Book.☆66Mar 15, 2023Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆319Nov 1, 2022Updated 3 years ago
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Jul 5, 2019Updated 6 years ago
- Explore design matrices interactively with R/Shiny☆38Mar 16, 2026Updated 3 weeks ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 3 months ago
- ☆27May 8, 2021Updated 4 years ago
- Manage Files Across Sessions☆13Oct 30, 2025Updated 5 months ago
- Interactively analyze single cell genomic data☆186Jan 14, 2026Updated 2 months ago
- ☆16Apr 17, 2024Updated last year
- A study to compare methods for clustering of scRNA-seq data☆47Jul 19, 2024Updated last year
- This contains the dataset for comparing scRNA-seq analysis methods☆93Aug 26, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Stickers for some Bioconductor packages - feel free to contribute and/or modify.☆136Mar 23, 2026Updated 2 weeks ago
- ☆33Jul 11, 2018Updated 7 years ago
- Single Cell RNA-seq UMI Filtering Facilitator☆10Oct 6, 2025Updated 6 months ago
- R toolkit for single cell genomics☆2,699Mar 31, 2026Updated last week
- ☆20Mar 28, 2017Updated 9 years ago
- Imputation method for scRNA-seq based on low-rank approximation☆79Dec 14, 2023Updated 2 years ago
- countsimQC - Compare characteristic features of count data sets☆30Feb 7, 2026Updated 2 months ago