drisso / SingleCellExperimentLinks
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
☆75Updated 5 months ago
Alternatives and similar repositories for SingleCellExperiment
Users that are interested in SingleCellExperiment are comparing it to the libraries listed below
Sorting:
- Clone of the Bioconductor repository for the scater package.☆96Updated 9 months ago
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆107Updated 2 years ago
- An R interface to enrichR☆93Updated 10 months ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 8 months ago
- scDataviz: single cell dataviz and downstream analyses☆65Updated 4 years ago
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆107Updated 2 years ago
- Content for the OSCA Book.☆66Updated 2 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆46Updated 2 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- Normalize CITEseq Data☆66Updated last month
- ☆55Updated 5 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆68Updated last year
- Toolkit for Single-Cell Velocity☆58Updated 5 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 3 months ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆80Updated 9 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆127Updated last month
- Toolbox with R scripts☆38Updated 7 years ago
- PHATE dimensionality reduction method implemented in R☆81Updated 4 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 3 months ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆117Updated last week
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 5 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆55Updated 4 years ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 5 years ago
- Topics In Data Science and Bioinformatics☆79Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Cytometry dATa anALYsis Tools☆70Updated last month
- Automated cell type classification☆114Updated 11 months ago
- R package for single cell and other data analysis using diffusion maps☆91Updated last month
- Quantify and interpret divers of variation in multilevel gene expression experiments☆69Updated 3 weeks ago