nghiavtr / ISOPLinks
Isoform-level expression patterns in single-cell RNA-sequencing data
☆11Updated 2 years ago
Alternatives and similar repositories for ISOP
Users that are interested in ISOP are comparing it to the libraries listed below
Sorting:
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆11Updated 6 years ago
- A set of tools for accurate quantitation of single-cell allele-specific expression☆13Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 3 years ago
- ☆14Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- Calculation of distance metrics for matrices☆26Updated 6 years ago
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- scover☆24Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Updated 4 years ago
- Exon-Intron Split Analysis (EISA) in R☆17Updated 2 weeks ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆24Updated 2 years ago
- ☆21Updated 8 years ago
- ☆25Updated 3 years ago
- ☆17Updated last year
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 7 months ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 5 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated 3 weeks ago
- Gene-level general linear mixed model☆23Updated last month
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 4 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago