alanocallaghan / scaterLinks
Clone of the Bioconductor repository for the scater package.
☆96Updated 5 months ago
Alternatives and similar repositories for scater
Users that are interested in scater are comparing it to the libraries listed below
Sorting:
- Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…☆106Updated 2 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆73Updated last month
- Toolbox with R scripts☆38Updated 6 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆60Updated last month
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆104Updated 2 years ago
- An R interface to enrichR☆91Updated 6 months ago
- Content for the OSCA Book.☆66Updated 2 years ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Identify and correct invalid gene symbols☆58Updated 8 months ago
- HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data☆97Updated 4 years ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- Bioconductor workshop: Analysis of single-cell RNA-seq data with R and Bioconductor☆79Updated 8 years ago
- ☆55Updated 4 years ago
- Multi-sample Unified Discriminant ANalysis☆73Updated 2 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆123Updated 3 months ago
- R package for robust clustering of single cell RNA sequencing data☆39Updated 2 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆95Updated 10 months ago
- Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRN…☆122Updated last year
- Pipelines for the analysis of 10x single-cell RNA-sequencing data☆58Updated 2 years ago
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆44Updated 8 months ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- ☆55Updated 5 months ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆67Updated last year
- Toolkit for Single-Cell Velocity☆58Updated last month
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 7 months ago
- A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential expression analysis.☆103Updated 2 years ago
- R package of colors for the Buenrostro Lab☆84Updated 11 months ago
- Normalize CITEseq Data☆66Updated 4 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago