Alternatives and similar repositories for DECENT:

Users that are interested in DECENT are comparing it to the libraries listed below

• statOmics / zinbwaveZinger
  Integrating zingeR with ZINB-WaVE weights
  ☆24Updated 7 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆31Updated last year
• statOmics / satuRn
  satuRn is a highly performant and scalable method for performing differential transcript usage analyses.
  ☆21Updated 2 years ago
• single-cell-genetics / limix_qtl
  ☆20Updated 9 months ago
• hb-gitified / cellrangerRkit
  Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)
  ☆19Updated 5 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆25Updated 2 years ago
• gjhunt / dtangle
  Cell type deconvolution from high-throughput gene expression profiling experiments.
  ☆31Updated 4 years ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆31Updated 3 years ago
• sa-lee / superintronic
  A tidy interface for coverage analysis
  ☆24Updated 5 years ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆20Updated 5 years ago
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆24Updated last year
• yuchaojiang / SCALE
  Allele-Specific Expression by Single-Cell RNA Sequencing
  ☆28Updated 4 years ago
• skinnider / dismay
  Calculation of distance metrics for matrices
  ☆25Updated 6 years ago
• bioturing / signac
  An analytics package for single cell data
  ☆22Updated 2 years ago
• nghiavtr / ISOP
  Isoform-level expression patterns in single-cell RNA-sequencing data
  ☆11Updated last year
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆17Updated 3 years ago
• kieranrcampbell / phenopath
  Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds
  ☆10Updated 6 years ago
• cozygene / TCA
  ☆18Updated 4 years ago
• rnabioco / scraps
  Single-cell RNA Processing Software
  ☆11Updated 5 months ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆19Updated last year
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆24Updated 3 years ago
• randel / MIND
  Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
  ☆44Updated last year
• SimoneTiberi / distinct
  distinct: a method for differential analyses via hierarchical permutation tests
  ☆11Updated last year
• single-cell-genetics / singlecell_neuroseq_paper
  Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation
  ☆21Updated 9 months ago
• HelenaLC / muscat-comparison
  ☆12Updated 10 months ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last week
• markziemann / mitch
  An R package for multi-dimensional pathway enrichment analysis
  ☆16Updated 4 months ago
• MonashBioinformaticsPlatform / celaref
  ☆14Updated 5 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated 9 months ago
• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆31Updated 4 years ago