Differential Expression with Capture Efficiency adjustmeNT
☆15Jan 3, 2023Updated 3 years ago
Alternatives and similar repositories for DECENT
Users that are interested in DECENT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Dec 14, 2023Updated 2 years ago
- Probabilistic pseudotime for single-cell RNA-seq data☆11Oct 6, 2017Updated 8 years ago
- Simple App to visualize single cell datasets☆22Apr 12, 2018Updated 8 years ago
- Dissecting the effects of DNA copy number variations on transcriptional programs at single-cell resolution☆14Feb 13, 2026Updated 5 months ago
- ☆23Jun 30, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package containing functions for assessing the replication/preservation of network topology for weighted gene coexpression network modu…☆13Apr 12, 2026Updated 3 months ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆12Mar 21, 2019Updated 7 years ago
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆21Feb 24, 2024Updated 2 years ago
- Framework for running bioinformatic workflows and pipelines using the Google Pipelines API as the underlying task-runner.☆12Mar 22, 2017Updated 9 years ago
- Integrating zingeR with ZINB-WaVE weights☆26Feb 15, 2018Updated 8 years ago
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 4 years ago
- R package to model time series accounting for noise in the temporal dimension. Specifically designed for single cell transcriptome experi…☆15Sep 24, 2021Updated 4 years ago
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆44Mar 13, 2024Updated 2 years ago
- Clone identification from single-cell data☆65Nov 10, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)☆22Aug 28, 2019Updated 6 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Sep 16, 2019Updated 6 years ago
- ☆12May 17, 2022Updated 4 years ago
- Glimma R package☆50Sep 2, 2024Updated last year
- ☆20Oct 4, 2023Updated 2 years ago
- Probabilistic gene expression barcodes for cell type annotation☆27Apr 26, 2022Updated 4 years ago
- ☆18Mar 11, 2018Updated 8 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆15Aug 17, 2023Updated 2 years ago
- Tools for processing UMI RNA-tag data☆132Apr 30, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆30Dec 23, 2019Updated 6 years ago
- ☆10Jan 24, 2021Updated 5 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Sep 28, 2021Updated 4 years ago
- A script to render all (or latest) reaper projects☆12May 17, 2024Updated 2 years ago
- R package for benchmarking single cell analysis methods☆33Oct 4, 2023Updated 2 years ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆24Jul 10, 2024Updated 2 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆88Apr 14, 2026Updated 3 months ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Aug 19, 2020Updated 5 years ago
- Clone of the Bioconductor repository for the DropletUtils package.☆67Apr 8, 2026Updated 3 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆11Sep 5, 2018Updated 7 years ago
- Characterize gene dynamics over trajectories using GLMs, GEEs, & GLMMs.☆16Mar 3, 2026Updated 4 months ago
- method to estimate PCR duplication rate from high-throughput sequencing data☆15Sep 22, 2017Updated 8 years ago
- code for data processing and visualisation associated with the stromal subclasses manuscript☆13Oct 30, 2020Updated 5 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆22Dec 25, 2022Updated 3 years ago
- Comparison of dimensionality reduction methods☆30Mar 24, 2020Updated 6 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆23May 4, 2026Updated 2 months ago