cz-ye / DECENT
Differential Expression with Capture Efficiency adjustmeNT
☆14Updated last year
Related projects ⓘ
Alternatives and complementary repositories for DECENT
- Integrating zingeR with ZINB-WaVE weights☆23Updated 6 years ago
- ☆18Updated 4 months ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)☆19Updated 5 years ago
- Pairwise Hierarchical Model☆13Updated 2 years ago
- An analytics package for single cell data☆21Updated 2 years ago
- Bead-based single-cell atac processing☆31Updated 2 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆20Updated last year
- A tidy interface for coverage analysis☆24Updated 4 years ago
- R package for benchmarking single cell analysis methods☆29Updated last year
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- An R package for multi-dimensional pathway enrichment analysis☆16Updated last week
- An R package to analyze single-cell V(D)J data☆24Updated 11 months ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆17Updated 3 years ago
- Exon-Intron Split Analysis (EISA) in R☆15Updated last week
- Identify Intra-, Inter-donor variations in bulk or single cell longitudinal dataset☆17Updated last year
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆16Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 4 years ago
- ☆14Updated 5 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 3 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated last week
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆15Updated 5 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- This package removes unwanted variation from raw sequencing count data using Negative Binomial and/or Zero Inflated Negative Binomial mod…☆18Updated 4 months ago
- Calculation of distance metrics for matrices☆25Updated 5 years ago