Generate cellular maps of differentiation manifolds with complex topologies.
☆27Jun 26, 2018Updated 7 years ago
Alternatives and similar repositories for graph_abstraction
Users that are interested in graph_abstraction are comparing it to the libraries listed below
Sorting:
- This code contains the neural network implementation from the nature communication manuscript NCOMMS-16-25447A.☆33Feb 8, 2018Updated 8 years ago
- Branching Gaussian process☆30May 14, 2023Updated 2 years ago
- R package to identify genes with differential distributions in single-cell RNA-seq☆34Mar 24, 2022Updated 3 years ago
- Code to support: "pcaReduce: hierarchical clustering of single cell transcriptional profiles"☆20Feb 24, 2024Updated 2 years ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆87Sep 17, 2025Updated 6 months ago
- scLVM is a modelling framework for single-cell RNA-seq data that can be used to dissect the observed heterogeneity into different sources…☆110Dec 16, 2022Updated 3 years ago
- ☆29Feb 1, 2023Updated 3 years ago
- This is the R implementation of a robust correlation matrix estimator usefull in case of high-dimensional data to remove the bias. It al…☆14Mar 10, 2019Updated 7 years ago
- CORNAS is a fast method for reliable DEG calls in unreplicated conditions.☆13Jul 14, 2019Updated 6 years ago
- Biclustering algorithm☆58Dec 11, 2017Updated 8 years ago
- ☆16Dec 11, 2018Updated 7 years ago
- Python Implementation of SIMLR for single-cell visualization and analysis☆24Jul 28, 2022Updated 3 years ago
- ☆69May 2, 2018Updated 7 years ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Feb 9, 2021Updated 5 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Apr 20, 2023Updated 2 years ago
- Tools for processing UMI RNA-tag data☆131Mar 15, 2023Updated 3 years ago
- ☆17Aug 31, 2017Updated 8 years ago
- This repository is retired software☆14Oct 29, 2015Updated 10 years ago
- Identify circular trajectories in scRNA-seq data using an autoencoder with sinusoidal activations☆24Dec 17, 2021Updated 4 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Jul 1, 2020Updated 5 years ago
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆20Jul 9, 2019Updated 6 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Feb 8, 2019Updated 7 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆170Jan 26, 2024Updated 2 years ago
- Normalization for single cell RNA-seq data☆51Jun 11, 2025Updated 9 months ago
- scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies☆10Oct 27, 2023Updated 2 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆19Jun 25, 2020Updated 5 years ago
- Scasat is a single cell ATAC-seq preprocessing and analysis pipeline☆35Feb 27, 2019Updated 7 years ago
- ☆10Dec 14, 2016Updated 9 years ago
- Comprehensive Human Expressed SequenceS☆19Jul 13, 2025Updated 8 months ago
- Tool for sharing, browsing and visualizing single-cell data stored in the Loom file format☆38Jan 10, 2025Updated last year
- URD - Reconstruction of Branching Developmental Trajectories☆126Jun 29, 2021Updated 4 years ago
- Dimensionality reduction for single cell RNA-seq data☆36Feb 9, 2020Updated 6 years ago
- R package for analyzing single-cell RNA-seq data☆179Feb 29, 2024Updated 2 years ago
- A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.☆16Nov 14, 2022Updated 3 years ago
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆10Apr 6, 2023Updated 2 years ago
- ☆21Jul 4, 2017Updated 8 years ago
- interactive visualization of single-cell transcriptomes☆11Mar 10, 2026Updated last week
- ☆21Aug 30, 2018Updated 7 years ago
- ☆42Sep 14, 2022Updated 3 years ago