Alternatives and similar repositories for graph_abstraction:

Users that are interested in graph_abstraction are comparing it to the libraries listed below

• WeiqiangZhou / BIRD
  Big data Regression for predicting DNase I hypersensitivity
  ☆30Updated 7 months ago
• dgrun / RaceID
  Algorithm for the inference of cell types from single-cell RNA-seq data.
  ☆44Updated 8 years ago
• pachterlab / NYMP_2018
  ☆28Updated 6 years ago
• YosefLab / FastProject
  Dimensionality reduction for single cell RNA-seq data
  ☆35Updated 5 years ago
• MSingerLab / COMETSC
  COMET Single-Cell Marker Detection tool
  ☆31Updated 2 years ago
• lanjiangboston / GiniClust
  GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index
  ☆36Updated 6 years ago
• SUwonglab / scABC
  ☆20Updated 5 years ago
• nghiavtr / BPSC
  Beta-Poisson model for single-cell RNA-seq data analyses
  ☆16Updated 6 years ago
• klarman-cell-observatory / scSVA
  Single-cell Scalable Visualization and Analytics
  ☆25Updated 6 years ago
• czi-hca-comp-tools / easy-data
  easy access to benchmark datasets
  ☆50Updated 6 years ago
• bioFAM / slalom
  ☆28Updated 2 years ago
• govinda-kamath / clustering_on_transcript_compatibility_counts
  Clustering cells from single cell RNA seq assays
  ☆46Updated 6 years ago
• markrobinsonuzh / scRNAseq_clustering_comparison
  A study to compare methods for clustering of scRNA-seq data
  ☆43Updated 8 months ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 5 years ago
• shenorrLabTRDF / cellAlign
  ☆39Updated 4 years ago
• caleblareau / proatac
  Preprocessing pipeline for (sc)ATAC data
  ☆10Updated 3 years ago
• soedinglab / merlot
  Reconstruct the lineage topology of a scRNA-seq differentiation dataset.
  ☆18Updated 4 years ago
• jessemzhang / tn_test
  post-clustering differential expression test
  ☆35Updated 5 years ago
• lanagarmire / SSrGE
  ☆33Updated 5 years ago
• broadinstitute / BipolarCell2016
  ☆22Updated 5 years ago
• ChristophH / in-lineage
  Data and code for the paper "Developmental diversification of cortical inhibitory interneurons"
  ☆24Updated 6 years ago
• ManchesterBioinference / Scasat
  Scasat is a single cell ATAC-seq preprocessing and analysis pipeline
  ☆35Updated 6 years ago
• ambrosejcarr / seqc
  Single-Cell Sequencing Quality Control and Processing Software
  ☆30Updated 5 years ago
• tinglab / reCAT
  ☆20Updated 6 years ago
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆61Updated 2 years ago
• hemberg-lab / scfind
  ☆42Updated last year
• SpatialTranscriptomicsResearch / std-nb
  Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018
  ☆22Updated 6 years ago
• theislab / pseudodynamics
  Dynamic models for single-cell RNA-seq time series.
  ☆40Updated 6 years ago
• SaskiaFreytag / cluster_benchmarking_code
  ☆16Updated 6 years ago