theislab / graph_abstraction
Generate cellular maps of differentiation manifolds with complex topologies.
☆26Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for graph_abstraction
- easy access to benchmark datasets☆50Updated 6 years ago
- post-clustering differential expression test☆35Updated 5 years ago
- Dimensionality reduction for single cell RNA-seq data☆35Updated 4 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆16Updated 5 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 5 years ago
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆43Updated 8 years ago
- ☆29Updated 5 years ago
- Reconstruct the lineage topology of a scRNA-seq differentiation dataset.☆18Updated 4 years ago
- ☆19Updated 7 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Updated 6 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- ☆28Updated last year
- Normalization for single cell RNA-seq data☆47Updated last year
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 2 months ago
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Updated 5 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 5 years ago
- Preprocessing pipeline for (sc)ATAC data☆10Updated 2 years ago
- ☆33Updated 5 years ago
- Evaluation of the effect of quantification choices on RNA velocity estimates☆27Updated 3 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- Harmony framework for connecting scRNA-seq data from discrete time points☆45Updated 4 months ago
- ☆22Updated 4 years ago
- R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data☆44Updated 7 years ago
- ☆34Updated 6 months ago