SaskiaFreytag / schexLinks
☆74Updated last year
Alternatives and similar repositories for schex
Users that are interested in schex are comparing it to the libraries listed below
Sorting:
- Clone of the Bioconductor repository for the basilisk package.☆29Updated last week
- ☆95Updated last year
- Quantify and interpret divers of variation in multilevel gene expression experiments☆68Updated 2 weeks ago
- Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.☆83Updated 3 weeks ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last week
- Visualize Cytometry data with ggplot2☆63Updated 2 months ago
- An online companion to the OSCA manuscript demonstrating Bioconductor resources and workflows for single-cell RNA-seq analysis.☆37Updated 2 years ago
- Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail☆79Updated last month
- Visualising single-cell trajectories, including comparisons between two models 📈☆31Updated 3 years ago
- MSigDB gene sets for multiple organisms in a tidy data format☆83Updated 3 months ago
- flowWorkspace☆45Updated 8 months ago
- Interactive Cytometry Data Analysis☆67Updated this week
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆47Updated 2 months ago
- Exploring dimension-reduced embeddings☆111Updated 3 years ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Automate package and project setup for Bioconductor packages☆54Updated 7 months ago
- Explore design matrices interactively with R/Shiny☆38Updated 2 weeks ago
- An R package for multivariate adaptive shrinkage.☆92Updated last year
- R package for benchmarking single cell analysis methods☆32Updated 2 years ago
- Brings SummarizedExperiment to the tidyverse☆28Updated last week
- Demonstration of the use of an R package to organize a data analysis project☆22Updated 5 years ago
- Bioconductor package for management of multi-assay data☆72Updated this week
- Extension of SpatialExperiment with sf☆55Updated 2 weeks ago
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆12Updated 3 years ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆47Updated 2 years ago
- Toolkit for Single-Cell Velocity☆58Updated 4 months ago
- Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).☆21Updated last year
- countsimQC - Compare characteristic features of count data sets☆29Updated 2 weeks ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Single-cell analysis with non-negative matrix factorization☆45Updated 3 months ago