compbiomed / celda
Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
☆48Updated 6 years ago
Alternatives and similar repositories for celda:
Users that are interested in celda are comparing it to the libraries listed below
- Clone of the Bioconductor repository for the zinbwave package, see https://bioconductor.org/packages/zinbwave☆43Updated last year
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- Beta version of 1D t-SNE heatmaps to visualize expression patterns of hundreds of genes simultaneously in scRNA-seq☆48Updated 6 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 3 weeks ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 7 years ago
- Citrus Development Code☆31Updated last year
- ☆62Updated last month
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated 4 months ago
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/pa…☆83Updated last week
- R package of techniques for comparing clusterings of single-cell sequencing data☆38Updated last year
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆51Updated 2 years ago
- Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCe…☆72Updated this week
- Independent Hypothesis Weighting☆15Updated last year
- Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets☆105Updated last year
- Clone of the Bioconductor repository for the basilisk package.☆27Updated 2 weeks ago
- Examples analyses using the single-cell RNA-seq data from mouse cell atlases☆23Updated 5 years ago
- ☆19Updated 7 years ago
- Statistical approach for removing unwanted variation from multiple single-cell datasets☆66Updated last year
- Clone of the Bioconductor repository for the scater package.☆96Updated 2 months ago
- Bayesian modelling of DNA methylation heterogeneity at single-cell resolution☆22Updated last year
- ☆37Updated 8 years ago
- An R package to construct Elastic Principal Graphs☆22Updated 5 years ago
- Code and manuscript files for Aaron and Karsten's deconvolution paper.☆16Updated 6 years ago
- ☆53Updated 2 months ago
- Glimma R package☆50Updated 8 months ago
- ☆94Updated last year
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆12Updated 6 years ago