COMBINE-lab / wasabi
Prepare Sailfish and Salmon output for downstream analysis
☆43Updated 5 years ago
Alternatives and similar repositories for wasabi:
Users that are interested in wasabi are comparing it to the libraries listed below
- Mapped QC analysis program☆44Updated 6 years ago
- The Genome U-Plot is a JavaScript tool to visualize chromosomal abnormalities in the Human Genome using a U-shape layout.☆31Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated last month
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Personal diploid genome creation and coordinate conversion☆26Updated last month
- Useful tools for working with Salmon output☆37Updated 4 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 7 months ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Genomic plot in trellis layout☆39Updated last year
- a set of NGS pipelines☆24Updated this week
- Tools for visualizing genomics data☆67Updated 3 years ago
- interactive plots for differential expression analysis☆32Updated last month
- Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at rea…☆26Updated 5 years ago
- RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon☆37Updated 7 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- A tool for evaluating RNA seq mapping☆22Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- Maximum likelihood demultiplexing☆47Updated 2 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 10 months ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- ☆20Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated last month
- Tools for next-generation sequencing analysis☆88Updated 5 years ago