carmonalab / SignatuR
A database of useful gene signatures for single-cell analysis
☆20Updated 9 months ago
Alternatives and similar repositories for SignatuR:
Users that are interested in SignatuR are comparing it to the libraries listed below
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆34Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 2 years ago
- ☆44Updated 5 years ago
- ☆39Updated 3 years ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 6 months ago
- A tool for removing doublets from single-cell RNA-seq data☆70Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆19Updated 2 years ago
- Robust identification of perturbed cell types in single-cell RNA-seq data☆29Updated last month
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Updated last year
- ☆29Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆52Updated 3 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 6 months ago
- Mosaic single cell data integration using non-overlapping features☆36Updated 2 years ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- Implementation of MaSigPro for scRNA-Seq Data☆14Updated 5 months ago
- Cell type pipes for R☆51Updated 11 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆33Updated last year
- A repository of case studies using ProjecTILs☆14Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆26Updated last month
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 2 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆30Updated last year
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆42Updated 11 months ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆26Updated 7 months ago
- Single-cell analysis with non-negative matrix factorization☆42Updated 2 months ago
- Functional Inference of Gene Regulation☆39Updated 6 months ago
- ☆29Updated 4 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 4 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆26Updated last year