Alternatives and similar repositories for SignatuR

Users that are interested in SignatuR are comparing it to the libraries listed below

• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆88Updated 2 months ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆40Updated 3 years ago
• zdebruine / singlet
  Single-cell analysis with non-negative matrix factorization
  ☆45Updated last month
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆20Updated 3 years ago
• hansenlab / tricycle
  ☆27Updated 3 years ago
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆31Updated 4 months ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆42Updated 3 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆42Updated last year
• FelixTheStudent / cellpypes
  Cell type pipes for R
  ☆52Updated last year
• rikenbit / scTensor
  R package for detection of cell-cell interaction using Non-negative Tensor Decomposition
  ☆34Updated 2 months ago
• BioBam / scMaSigPro
  Implementation of MaSigPro for scRNA-Seq Data
  ☆14Updated last year
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆39Updated 2 years ago
• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆31Updated 2 years ago
• wmacnair / SampleQC
  Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data
  ☆37Updated 2 years ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆31Updated last year
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• Qile0317 / APackOfTheClones
  Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …
  ☆19Updated 2 weeks ago
• SingleR-inc / celldex
  Collection of cell type reference datasets.
  ☆59Updated last year
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆87Updated 3 months ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆33Updated 4 years ago
• oganm / homologene
  An r package that works as a wrapper to homologene
  ☆46Updated last year
• supatt-lab / SingCellaR
  an integrative analysis tool for analysing large-scale single cell RNA-sequencing data
  ☆35Updated 2 years ago
• ludvigla / semla
  ☆91Updated last week
• cbib / Seurat-Integrate
  R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…
  ☆31Updated last week
• Elisseeff-Lab / domino
  A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…
  ☆17Updated 9 months ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated 10 months ago
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆64Updated 10 months ago
• bdsc-tds / SPLIT
  Profile purification of single-cell spatial transcriptomics data
  ☆17Updated 3 weeks ago
• Single-Cell-Genomics-Group-CNAG-CRG / ST-analysis
  General notes and resources on how to analyze Spatial Transcriptomics data
  ☆12Updated 2 years ago