carmonalab / SignatuR
A database of useful gene signatures for single-cell analysis
☆20Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for SignatuR
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆33Updated 3 years ago
- scGSVA: Perform GSVA for single cell RNA seq☆48Updated last week
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆14Updated this week
- Cluster Identity Predictor (R package implementation)☆18Updated 2 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆26Updated 4 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆26Updated this week
- A tool for removing doublets from single-cell RNA-seq data☆69Updated 3 years ago
- an integrative analysis tool for analysing large-scale single cell RNA-sequencing data☆31Updated last year
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆28Updated 10 months ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 4 months ago
- ☆42Updated 4 years ago
- scWGCNA☆55Updated 2 years ago
- ☆53Updated 3 years ago
- Single-cell analysis with non-negative matrix factorization☆42Updated 3 weeks ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆24Updated last year
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆32Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆68Updated 2 months ago
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆32Updated 3 years ago
- ☆27Updated 3 months ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆63Updated 6 months ago
- Cell type pipes for R☆51Updated 9 months ago
- ☆29Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆46Updated last month
- ☆39Updated 3 years ago
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆24Updated 5 months ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago