carmonalab / SignatuRLinks
A database of useful gene signatures for single-cell analysis
☆27Updated 5 months ago
Alternatives and similar repositories for SignatuR
Users that are interested in SignatuR are comparing it to the libraries listed below
Sorting:
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 3 months ago
- ☆27Updated 3 years ago
- Single-cell analysis with non-negative matrix factorization☆45Updated 3 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 3 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆20Updated last month
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 4 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆43Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Cell type pipes for R☆52Updated last year
- ☆94Updated last month
- Implementation of MaSigPro for scRNA-Seq Data☆17Updated last year
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆30Updated last year
- Robust identification of perturbed cell types in single-cell RNA-seq data☆34Updated 11 months ago
- R package for specialised analysis of single cell data☆39Updated 3 years ago
- ☆50Updated 5 years ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆31Updated last month
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆33Updated 5 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- Profile purification of single-cell spatial transcriptomics data☆20Updated 2 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆31Updated 2 years ago
- Gene regulatory network containing signed transcription factor-target gene interactions☆89Updated 4 months ago
- General notes and resources on how to analyze Spatial Transcriptomics data☆12Updated 2 years ago