FelixTheStudent / cellpypesLinks
Cell type pipes for R
☆52Updated last year
Alternatives and similar repositories for cellpypes
Users that are interested in cellpypes are comparing it to the libraries listed below
Sorting:
- Normalize CITEseq Data☆66Updated 3 weeks ago
- Framework for sensitive DE testing (using neighbourhoods)☆75Updated 3 weeks ago
- Latent Embedding Multivariate Regression☆97Updated last year
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆90Updated 5 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆92Updated 11 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆40Updated 4 years ago
- An r package that works as a wrapper to homologene☆47Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated this week
- Gene regulatory network containing signed transcription factor-target gene interactions☆91Updated 6 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- ☆41Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆20Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- Toolkit for Single-Cell Velocity☆58Updated 4 months ago
- scDataviz: single cell dataviz and downstream analyses☆64Updated 4 years ago
- AnnData interoperability in R☆130Updated this week
- From geospatial to spatial -omics☆99Updated this week
- Single-cell analysis with non-negative matrix factorization☆45Updated 4 months ago
- R package for semi-supervised single-cell data integration☆90Updated 3 months ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- ☆55Updated 4 years ago
- An R-based interface for loom files☆67Updated 5 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆20Updated 3 months ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆45Updated 2 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆38Updated last week
- A database of useful gene signatures for single-cell analysis☆27Updated 6 months ago
- ☆37Updated 9 years ago
- Various utility functions for Seurat single-cell analysis☆55Updated this week