FelixTheStudent / cellpypesLinks
Cell type pipes for R
☆52Updated 2 years ago
Alternatives and similar repositories for cellpypes
Users that are interested in cellpypes are comparing it to the libraries listed below
Sorting:
- Framework for sensitive DE testing (using neighbourhoods)☆76Updated 2 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Updated 3 years ago
- Normalize CITEseq Data☆67Updated 3 months ago
- Latent Embedding Multivariate Regression☆98Updated last year
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- Single-cell analysis with non-negative matrix factorization☆47Updated 6 months ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated last month
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- Cluster Identity Predictor (R package implementation)☆21Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆46Updated 3 years ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 2 months ago
- An r package that works as a wrapper to homologene☆49Updated 2 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Updated 5 months ago
- From geospatial to spatial -omics☆100Updated this week
- R package for single cell and other data analysis using diffusion maps☆92Updated 2 months ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- R package for semi-supervised single-cell data integration☆95Updated last week
- Gene regulatory network containing signed transcription factor-target gene interactions☆97Updated 8 months ago
- scDataviz: single cell dataviz and downstream analyses☆66Updated 4 years ago
- ☆48Updated 2 months ago
- R package for detection of cell-cell interaction using Non-negative Tensor Decomposition☆34Updated 7 months ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago
- ☆29Updated 2 years ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆47Updated 4 months ago
- A database of useful gene signatures for single-cell analysis☆28Updated 8 months ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Updated last week
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Collection of cell type reference datasets.☆63Updated last year