CHOIR : Clustering Hierarchy Optimization by Iterative Random forests (www.CHOIRclustering.com)
☆93Apr 15, 2026Updated 3 months ago
Alternatives and similar repositories for CHOIR
Users that are interested in CHOIR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆51May 14, 2025Updated last year
- A package for analyzing spatial transcriptomics data with Gaussian smoothing, spatial gene correlation network clustering, gene module vi…☆22Apr 3, 2026Updated 4 months ago
- SIDISH: Semi-supervised Iterative Deep Learning for Identifying Single-cell High-risk Populations☆23Jul 30, 2026Updated last week
- Implements *CellAnnotator (aka *CAT/starCAT), annotating scRNA-Seq with predefined gene expression programs☆108Jul 13, 2026Updated 3 weeks ago
- Methods to discover gene programs on single-cell data☆203Jul 21, 2026Updated 3 weeks ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Oct 31, 2024Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated 2 weeks ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆136Jul 24, 2026Updated 2 weeks ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 8 months ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 11 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆306Jun 30, 2026Updated last month
- ☆19May 25, 2026Updated 2 months ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 8 months ago
- AnnData interoperability in R☆194Aug 3, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- marker-based purification of cell types from single-cell RNA-seq datasets☆145Mar 13, 2026Updated 4 months ago
- ☆224Jun 13, 2026Updated last month
- R package implementation of Milo for testing for differential abundance in KNN graphs☆442May 11, 2026Updated 2 months ago
- Paired Insertion Counting for snATAC-seq data☆19Mar 15, 2026Updated 4 months ago
- SCIPAC (Single- Cell and bulk data-based Identifier for Phenotype Associated Cells) is a computational method that identifies cells in si…☆16Jun 30, 2024Updated 2 years ago
- Python playground for cell-type-specific biology☆14Jul 10, 2026Updated last month
- scFOCAL operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 datase…☆25Jun 23, 2026Updated last month
- ☆51May 18, 2026Updated 2 months ago
- High dimensional weighted gene co-expression network analysis☆489Jun 16, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆18Jan 23, 2026Updated 6 months ago
- Open4Gene, A Hurdle Model-based Method for Peak-to-Gene Linkage Analysis☆17Mar 17, 2026Updated 4 months ago
- R package for semi-supervised single-cell data integration☆101Jan 27, 2026Updated 6 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆127Sep 7, 2024Updated last year
- CASSIA: A Multi-Agent LLM-Based Single-Cell Cell Type Annotation Framework☆100Jun 21, 2026Updated last month
- Ordering gene-expression and functional events in single-cell experiments☆33Jul 6, 2026Updated last month
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆321Jul 30, 2026Updated last week
- A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to repr…☆258Mar 14, 2026Updated 4 months ago
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆89Mar 19, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- AUCell: score single cells with gene regulatory networks☆201Mar 9, 2024Updated 2 years ago
- ☆17Jul 13, 2024Updated 2 years ago
- R package to infer biological activities from omics data using a collection of methods.☆303Dec 16, 2025Updated 7 months ago
- Methods for detecting doublets in single-cell sequencing data☆259Jul 7, 2026Updated last month
- Single-Cell Inference of Class Switch Recombination☆24Jun 19, 2026Updated last month
- reticulate-free single cell format conversion☆218Jul 10, 2026Updated last month
- A computational framework☆19Jul 23, 2026Updated 2 weeks ago