enblacar / SCpubrLinks
Generate high quality, publication ready visualizations for single cell transcriptomics data.
☆208Updated last month
Alternatives and similar repositories for SCpubr
Users that are interested in SCpubr are comparing it to the libraries listed below
Sorting:
- Gene set scoring for single-cell data☆165Updated this week
- ☆176Updated 4 months ago
- Easy single cell analysis platform for enrichment☆193Updated last month
- R package to visualize gene expression data based on weighted kernel density estimation☆105Updated last year
- Multi-sample multi-group scRNA-seq analysis tools☆203Updated 2 weeks ago
- Fast Wilcoxon and auROC☆189Updated 10 months ago
- AUCell: score single cells with gene regulatory networks☆169Updated last year
- Some tools for plotting single-cell data☆175Updated 4 months ago
- Significance analysis for clustering single-cell RNA-sequencing data☆119Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆122Updated 2 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆163Updated last month
- ☆173Updated 3 weeks ago
- Conversion between scRNA-seq objects☆187Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆218Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- reticulate-free single cell format conversion☆187Updated last week
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 11 months ago
- Clone of the Bioconductor repository for the SingleR package.☆195Updated 2 months ago
- Cell type prioritization in single-cell data☆125Updated 11 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆112Updated last month
- Shiny Interactive Web Apps for Single-Cell Data☆194Updated 5 months ago
- Methods for detecting doublets in single-cell sequencing data☆209Updated last month
- Multiome GRN inference.☆127Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆272Updated last week
- Interactively analyze single cell genomic data☆183Updated last week
- Interpretation of cell states using reference single-cell maps☆293Updated last month
- Efficient and precise single-cell reference atlas mapping with Symphony☆110Updated 2 years ago
- Create stacked violin plot☆51Updated 3 years ago
- A Bayesian model for compositional single-cell data analysis☆176Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆148Updated 3 years ago