Generate high quality, publication ready visualizations for single cell transcriptomics data.
☆243Mar 2, 2026Updated 5 months ago
Alternatives and similar repositories for SCpubr
Users that are interested in SCpubr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to infer biological activities from omics data using a collection of methods.☆303Dec 16, 2025Updated 7 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆309Jun 30, 2026Updated last month
- Methods for detecting doublets in single-cell sequencing data☆259Jul 7, 2026Updated last month
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆667Mar 11, 2026Updated 5 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆442May 11, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 5 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆195Aug 12, 2025Updated last year
- High dimensional weighted gene co-expression network analysis☆489Jun 16, 2026Updated last month
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆321Jul 30, 2026Updated 2 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆247Aug 7, 2024Updated 2 years ago
- Conversion between scRNA-seq objects☆210May 5, 2026Updated 3 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆89Oct 6, 2023Updated 2 years ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆105Apr 16, 2026Updated 3 months ago
- Easy single cell analysis platform for enrichment☆228Updated this week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆793Jan 6, 2024Updated 2 years ago
- TRAjectory-based Differential Expression analysis for SEQuencing data☆310Jun 17, 2025Updated last year
- ☆128Sep 4, 2025Updated 11 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆145Mar 13, 2026Updated 5 months ago
- R package for integrating and analyzing multiple single-cell datasets☆432Feb 4, 2026Updated 6 months ago
- A tool for semi-automatic cell type classification☆500May 22, 2026Updated 2 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆264Jul 8, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- AUCell: score single cells with gene regulatory networks☆201Mar 9, 2024Updated 2 years ago
- Interactively analyze single cell genomic data☆189Jan 14, 2026Updated 6 months ago
- Useful functions to make your scRNA-seq plot more cool!☆397Apr 18, 2026Updated 3 months ago
- Fast Wilcoxon and auROC☆216May 5, 2026Updated 3 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆240Jul 6, 2026Updated last month
- R package to visualize gene expression data based on weighted kernel density estimation☆116Feb 6, 2026Updated 6 months ago
- ☆224Jun 13, 2026Updated 2 months ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆214Dec 10, 2025Updated 8 months ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆61Sep 17, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51May 17, 2026Updated 2 months ago
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…