Alternatives and similar repositories for SCpubr

Users that are interested in SCpubr are comparing it to the libraries listed below

• carmonalab / UCell
  Gene set scoring for single-cell data
  ☆180Updated 3 months ago
• zktuong / ktplots
  Some tools for plotting single-cell data
  ☆177Updated 8 months ago
• aertslab / AUCell
  AUCell: score single cells with gene regulatory networks
  ☆183Updated last year
• powellgenomicslab / Nebulosa
  R package to visualize gene expression data based on weighted kernel density estimation
  ☆112Updated this week
• HelenaLC / muscat
  Multi-sample multi-group scRNA-seq analysis tools
  ☆217Updated last month
• neurorestore / Libra
  ☆181Updated 9 months ago
• immunogenomics / presto
  Fast Wilcoxon and auROC
  ☆204Updated last year
• BorchLab / escape
  Easy single cell analysis platform for enrichment
  ☆211Updated last month
• basilkhuder / Seurat-to-RNA-Velocity
  A guide to using a Seurat object in conjunction with RNA Velocity
  ☆140Updated 4 years ago
• igrabski / sc-SHC
  Significance analysis for clustering single-cell RNA-sequencing data
  ☆123Updated last year
• huayc09 / SeuratExtend
  ☆203Updated 2 months ago
• saezlab / liana
  LIANA: a LIgand-receptor ANalysis frAmework
  ☆230Updated last year
• satijalab / azimuth
  A Shiny web app for mapping datasets using Seurat v4
  ☆144Updated last year
• Dragonmasterx87 / Interactive-3D-Plotting-in-Seurat-3.0.0
  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
  ☆122Updated 2 years ago
• neurorestore / Augur
  Cell type prioritization in single-cell data
  ☆138Updated last year
• theislab / zellkonverter
  Conversion between scRNA-seq objects
  ☆198Updated 3 weeks ago
• compbiomed / singleCellTK
  Interactively analyze single cell genomic data
  ☆184Updated 3 weeks ago
• saeyslab / multinichenetr
  MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…
  ☆179Updated 5 months ago
• AntonioDeFalco / SCEVAN
  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …
  ☆121Updated 2 months ago
• SingleR-inc / SingleR
  Clone of the Bioconductor repository for the SingleR package.
  ☆199Updated last month
• cellgeni / schard
  reticulate-free single cell format conversion
  ☆208Updated 2 weeks ago
• ZJUFanLab / scCATCH
  Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
  ☆237Updated 2 years ago
• plger / scDblFinder
  Methods for detecting doublets in single-cell sequencing data
  ☆230Updated last month
• satijalab / seurat-data
  Dataset distribution for Seurat
  ☆151Updated 11 months ago
• ycl6 / StackedVlnPlot
  Create stacked violin plot
  ☆51Updated 3 years ago
• SGDDNB / ShinyCell
  Shiny Interactive Web Apps for Single-Cell Data
  ☆203Updated 9 months ago
• samuel-marsh / scCustomize
  R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆288Updated last week
• bnprks / BPCells
  Scaling Single Cell Analysis to Millions of Cells
  ☆257Updated 3 weeks ago
• theislab / scCODA
  A Bayesian model for compositional single-cell data analysis
  ☆188Updated 3 weeks ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆113Updated 3 months ago