Generate high quality, publication ready visualizations for single cell transcriptomics data.
☆226Mar 2, 2026Updated 4 months ago
Alternatives and similar repositories for SCpubr
Users that are interested in SCpubr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package to infer biological activities from omics data using a collection of methods.☆300Dec 16, 2025Updated 6 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆302Jun 25, 2026Updated last week
- Methods for detecting doublets in single-cell sequencing data☆256Jun 23, 2026Updated last week
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆653Mar 11, 2026Updated 3 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆436May 11, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆191Aug 12, 2025Updated 10 months ago
- A package to help convert different single-cell data formats to each other☆472Feb 20, 2026Updated 4 months ago
- High dimensional weighted gene co-expression network analysis☆481Jun 16, 2026Updated 2 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆243Aug 7, 2024Updated last year
- Conversion between scRNA-seq objects☆210May 5, 2026Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆102Apr 16, 2026Updated 2 months ago
- inferring cell-cell communication from scRNA-seq of ligand-receptor☆88Oct 6, 2023Updated 2 years ago
- scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial dat…☆307Updated this week
- ☆224Jun 13, 2026Updated 3 weeks ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- Some tools for plotting single-cell data☆178May 17, 2025Updated last year
- TRAjectory-based Differential Expression analysis for SEQuencing data☆302Jun 17, 2025Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆791Jan 6, 2024Updated 2 years ago
- ☆128Sep 4, 2025Updated 10 months ago
- A tool for semi-automatic cell type classification☆491May 22, 2026Updated last month
- marker-based purification of cell types from single-cell RNA-seq datasets☆144Mar 13, 2026Updated 3 months ago
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 4 months ago
- AUCell: score single cells with gene regulatory networks☆196Mar 9, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Multi-sample multi-group scRNA-seq analysis tools☆235Jun 4, 2026Updated last month
- Useful functions to make your scRNA-seq plot more cool!☆397Apr 18, 2026Updated 2 months ago
- Interactively analyze single cell genomic data☆188Jan 14, 2026Updated 5 months ago
- R package to visualize gene expression data based on weighted kernel density estimation☆115Feb 6, 2026Updated 4 months ago
- Fast Wilcoxon and auROC☆213May 5, 2026Updated last month
- Easy single cell analysis platform for enrichment☆227Apr 3, 2026Updated 3 months ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆61Sep 17, 2024Updated last year
- scDIOR: Single cell data IO softwaRe☆156Feb 15, 2022Updated 4 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51May 17, 2026Updated last month
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆122Jan 22, 2024Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 6 months ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 6 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆169May 6, 2025Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆332Nov 1, 2022Updated 3 years ago
- tools and notes for spatial omics☆364Feb 26, 2025Updated last year
- Analysis of cell-cell communication at single-cell resolution☆107Sep 10, 2024Updated last year