enblacar / SCpubr
Generate high quality, publication ready visualizations for single cell transcriptomics data.
☆176Updated this week
Alternatives and similar repositories for SCpubr:
Users that are interested in SCpubr are comparing it to the libraries listed below
- Easy single cell analysis platform for enrichment☆159Updated 2 weeks ago
- R package to visualize gene expression data based on weighted kernel density estimation☆99Updated 11 months ago
- Gene set scoring for single-cell data☆143Updated 3 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆138Updated last month
- ☆162Updated 5 months ago
- ☆120Updated this week
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆242Updated last week
- LIANA: a LIgand-receptor ANalysis frAmework☆192Updated 6 months ago
- Interactively analyze single cell genomic data☆181Updated this week
- Clone of the Bioconductor repository for the SingleR package.☆182Updated last month
- Multi-sample multi-group scRNA-seq analysis tools☆180Updated this week
- Conversion between scRNA-seq objects☆159Updated 2 months ago
- A Shiny web app for mapping datasets using Seurat v4☆121Updated 3 months ago
- reticulate-free single cell format conversion☆123Updated 2 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆102Updated last week
- Efficient and precise single-cell reference atlas mapping with Symphony☆102Updated 2 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆110Updated 5 months ago
- Fast Wilcoxon and auROC☆173Updated 3 months ago
- Multiome GRN inference.☆115Updated 9 months ago
- A Bayesian model for compositional single-cell data analysis☆155Updated last year
- The integration of single cell rank-based gene set enrichment analysis☆119Updated 6 months ago
- Some tools for plotting single-cell data☆167Updated last month
- Methods to discover gene programs on single-cell data☆99Updated 2 months ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆97Updated this week
- Quantifying metabolism activity at the single-cell resolution☆127Updated 6 months ago
- Scaling Single Cell Analysis to Millions of Cells☆179Updated this week
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆264Updated 2 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated last year
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆222Updated last year
- Methods for detecting doublets in single-cell sequencing data☆180Updated last week