statgen / popscle
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
☆47Updated 3 years ago
Alternatives and similar repositories for popscle:
Users that are interested in popscle are comparing it to the libraries listed below
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆42Updated 2 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆50Updated last year
- Clone of the Bioconductor repository for the DropletUtils package.☆57Updated 2 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- ☆53Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 4 years ago
- A tool for removing doublets from single-cell RNA-seq data☆72Updated 4 years ago
- Clone identification from single-cell data☆61Updated 2 years ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆53Updated 4 years ago
- ☆33Updated 5 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆77Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- ☆58Updated 6 months ago
- R package for robust clustering of single cell RNA sequencing data☆38Updated last year
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆51Updated 3 years ago
- Robust Allele Specific Quantification and quality controL☆39Updated 3 years ago
- An R-based interface for loom files☆66Updated 4 years ago
- ☆38Updated 4 years ago
- A single cell RNA-seq reference map of human hematopoietic development in the bone marrow, with balanced representation of hematopoietic …☆35Updated 4 months ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆67Updated last month
- A modular, containerized pipeline for ATAC-seq data processing☆55Updated 2 weeks ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆74Updated last week
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- Normalize CITEseq Data☆65Updated 8 months ago
- Clone of the Bioconductor repository for the batchelor package.☆16Updated 7 months ago
- Functional Inference of Gene Regulation☆40Updated 7 months ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆31Updated 2 years ago