statgen / popscleLinks
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
☆58Updated 4 years ago
Alternatives and similar repositories for popscle
Users that are interested in popscle are comparing it to the libraries listed below
Sorting:
- ☆34Updated 6 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated 2 years ago
- Genotype-free demultiplexing of pooled single-cell RNA-Seq, using a hidden state model for identifying genetically distinct samples withi…☆41Updated 2 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆43Updated 3 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- Clone of the Bioconductor repository for the DropletUtils package.☆63Updated 3 months ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- ☆59Updated last year
- Pipeline for initial analysis of droplet-based single-cell RNA-seq data☆95Updated 3 years ago
- ☆55Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆86Updated 3 weeks ago
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Updated this week
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 6 years ago
- Robust Allele Specific Quantification and quality controL☆40Updated 4 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆79Updated 2 years ago
- R package for robust clustering of single cell RNA sequencing data☆40Updated 2 years ago
- ☆45Updated 3 weeks ago
- ☆34Updated 6 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- scWGCNA☆61Updated 3 years ago
- ☆32Updated 11 months ago
- Normalize CITEseq Data☆66Updated last month
- Count HLA alleles in single-cell RNA-seq data☆62Updated 4 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated last year