lcmmichielsen / scHPL
☆35Updated 2 weeks ago
Alternatives and similar repositories for scHPL:
Users that are interested in scHPL are comparing it to the libraries listed below
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- ☆30Updated 2 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆26Updated 2 years ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆34Updated 3 years ago
- Information-based dimensionality reduction☆29Updated 3 months ago
- Functional Inference of Gene Regulation☆40Updated 8 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated 11 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆48Updated 2 weeks ago
- Single-cell Case Control Analysis☆48Updated 4 months ago
- Clone identification from single-cell data☆61Updated 2 years ago
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆31Updated 8 months ago
- ☆29Updated last year
- .h5mu files interface for Seurat☆28Updated last year
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆19Updated 2 years ago
- ☆38Updated 4 years ago
- ☆31Updated 5 years ago
- ☆30Updated last month
- ☆36Updated 6 months ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 3 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- ☆36Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆73Updated 10 months ago
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs☆40Updated 2 years ago
- ☆37Updated 3 years ago
- ☆21Updated 4 months ago
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 3 years ago