swolock / scrublet
Detect doublets in single-cell RNA-seq data
☆138Updated 4 years ago
Alternatives and similar repositories for scrublet:
Users that are interested in scrublet are comparing it to the libraries listed below
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆149Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆139Updated 2 years ago
- Methods for detecting doublets in single-cell sequencing data☆174Updated last week
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆141Updated this week
- A Bayesian model for compositional single-cell data analysis☆155Updated last year
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆153Updated 6 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆141Updated last month
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆194Updated this week
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆133Updated this week
- Significance analysis for clustering single-cell RNA-sequencing data☆108Updated 4 months ago
- A tool for detecting somatic variants in single cell data☆182Updated 4 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆263Updated 2 years ago
- Clustering scRNAseq by genotypes☆174Updated 2 months ago
- Conversion between scRNA-seq objects☆157Updated last month
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆157Updated 11 months ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆192Updated 9 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆95Updated this week
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆109Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆120Updated 2 months ago
- SingleCellNet: classify single cells across species and platforms☆134Updated last year
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆111Updated this week
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆221Updated last year
- RNA velocity estimation in Python☆164Updated last year
- Scissor package☆199Updated 8 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆119Updated 8 months ago
- reticulate-free single cell format conversion☆109Updated last month
- Differential expression analysis for single-cell RNA-seq data.☆195Updated last year
- LIANA: a LIgand-receptor ANalysis frAmework☆187Updated 5 months ago