swolock / scrubletLinks
Detect doublets in single-cell RNA-seq data
☆155Updated 4 years ago
Alternatives and similar repositories for scrublet
Users that are interested in scrublet are comparing it to the libraries listed below
Sorting:
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆164Updated 2 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆167Updated last year
- A Bayesian model for compositional single-cell data analysis☆173Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆145Updated 3 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆210Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆128Updated last year
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆140Updated 3 weeks ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆157Updated 3 weeks ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆145Updated 8 months ago
- Clustering scRNAseq by genotypes☆188Updated 9 months ago
- AUCell: score single cells with gene regulatory networks☆164Updated last year
- Methods for detecting doublets in single-cell sequencing data☆205Updated 2 weeks ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆166Updated 4 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆154Updated 2 weeks ago
- reticulate-free single cell format conversion☆182Updated 3 weeks ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆166Updated last week
- Significance analysis for clustering single-cell RNA-sequencing data☆118Updated 11 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆115Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆213Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆112Updated 9 months ago
- RNA velocity estimation in Python☆172Updated 3 months ago
- Conversion between scRNA-seq objects☆184Updated 2 months ago
- CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.☆161Updated 4 months ago
- Test genes for Spatial Variation☆175Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆118Updated 2 weeks ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆112Updated 7 months ago
- A tool for detecting somatic variants in single cell data☆212Updated 11 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆233Updated 7 months ago