swolock / scrubletLinks
Detect doublets in single-cell RNA-seq data
☆161Updated 4 years ago
Alternatives and similar repositories for scrublet
Users that are interested in scrublet are comparing it to the libraries listed below
Sorting:
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆180Updated this week
- A Bayesian model for compositional single-cell data analysis☆183Updated 2 years ago
- scDIOR: Single cell data IO softwaRe☆150Updated 3 years ago
- A tool for detecting somatic variants in single cell data☆215Updated last year
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆169Updated last year
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆169Updated 3 years ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆170Updated 3 months ago
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆138Updated 2 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆169Updated 8 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆149Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆123Updated 7 months ago
- reticulate-free single cell format conversion☆198Updated last week
- RNA velocity estimation in Python☆174Updated 2 months ago
- Reference-free cell-type deconvolution of multi-cellular spatially resolved transcriptomics data☆150Updated 4 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆226Updated last year
- Conversion between scRNA-seq objects☆193Updated last week
- Significance analysis for clustering single-cell RNA-sequencing data☆120Updated last year
- Clustering scRNAseq by genotypes☆190Updated 3 weeks ago
- AUCell: score single cells with gene regulatory networks☆177Updated last year
- Convert between AnnData and SingleCellExperiment☆142Updated this week
- A guide to using a Seurat object in conjunction with RNA Velocity☆139Updated 3 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆239Updated 10 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆225Updated last year
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- Test genes for Spatial Variation☆178Updated last year
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆117Updated last month
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆234Updated 2 years ago
- Signature Analysis and Visualization for Single-Cell RNA-seq☆174Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆122Updated this week
- ☆178Updated 7 months ago