theislab / scveloLinks
RNA Velocity generalized through dynamical modeling
☆462Updated 6 months ago
Alternatives and similar repositories for scvelo
Users that are interested in scvelo are comparing it to the libraries listed below
Sorting:
- A package to help convert different single-cell data formats to each other☆438Updated last year
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆536Updated 2 months ago
- NicheNet: predict active ligand-target links between interacting cells☆561Updated last month
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆354Updated last month
- ☆357Updated 3 years ago
- This is the alpha version of the CellOracle package☆378Updated 8 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆318Updated 2 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆431Updated 6 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆427Updated 3 months ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆428Updated last month
- A tool for semi-automatic cell type classification☆404Updated this week
- Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data☆367Updated 3 weeks ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆466Updated last year
- R package for integrating and analyzing multiple single-cell datasets☆421Updated 2 weeks ago
- CellRank: dynamics from multi-view single-cell data☆393Updated last week
- Collections of library structure and sequence of popular single cell genomic methods☆477Updated 3 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆393Updated last month
- Panoramic stitching of single cell data☆289Updated 2 months ago
- ☆404Updated 2 months ago
- A toolkit for single-cell immune profiling☆345Updated this week
- R package for detecting doublets in single-cell RNA sequencing data☆491Updated 5 months ago
- scripts and notebooks from sanbomics☆440Updated 9 months ago
- ☆275Updated 10 months ago
- Benchmarking analysis of data integration tools☆376Updated 2 weeks ago
- Reference mapping for single-cell genomics☆382Updated last month
- 10x Genomics Single Cell Analysis☆428Updated 7 months ago
- Scanpy Tutorials.☆220Updated this week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆394Updated last week
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆456Updated 2 weeks ago
- R toolkit for the analysis of single-cell chromatin data☆388Updated last week