Alternatives and similar repositories for scvelo:

Users that are interested in scvelo are comparing it to the libraries listed below

• cellgeni / sceasy
  A package to help convert different single-cell data formats to each other
  ☆413Updated last year
• aertslab / pySCENIC
  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…
  ☆484Updated 11 months ago
• saeyslab / nichenetr
  NicheNet: predict active ligand-target links between interacting cells
  ☆522Updated 3 weeks ago
• chris-mcginnis-ucsf / DoubletFinder
  R package for detecting doublets in single-cell RNA sequencing data
  ☆448Updated last week
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆407Updated last month
• scverse / scanpy-tutorials
  Scanpy Tutorials.
  ☆206Updated this week
• Teichlab / cellphonedb
  ☆353Updated 3 years ago
• r3fang / SnapATAC
  Analysis Pipeline for Single Cell ATAC-seq
  ☆314Updated last year
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆453Updated 3 months ago
• broadinstitute / CellBender
  CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
  ☆314Updated 8 months ago
• morris-lab / CellOracle
  This is the alpha version of the CellOracle package
  ☆341Updated 2 months ago
• IanevskiAleksandr / sc-type
  ☆257Updated 4 months ago
• agitter / single-cell-pseudotime
  An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
  ☆418Updated this week
• aertslab / SCENIC
  SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
  ☆437Updated 11 months ago
• scRNA-tools / scRNA-tools
  Table of software for the analysis of single-cell RNA-seq data.
  ☆316Updated this week
• BorchLab / scRepertoire
  A toolkit for single-cell immune profiling
  ☆328Updated this week
• Teichlab / celltypist
  A tool for semi-automatic cell type classification
  ☆346Updated 3 months ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆599Updated last month
• satijalab / seurat-wrappers
  Community-provided extensions to Seurat
  ☆324Updated 4 months ago
• cole-trapnell-lab / monocle3
  ☆373Updated 2 months ago
• welch-lab / liger
  R package for integrating and analyzing multiple single-cell datasets
  ☆408Updated 2 months ago
• ventolab / CellphoneDB
  CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
  ☆369Updated 2 months ago
• 10XGenomics / cellranger
  10x Genomics Single Cell Analysis
  ☆390Updated last month
• theislab / scib
  Benchmarking analysis of data integration tools
  ☆338Updated 2 months ago
• dylkot / cNMF
  Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data
  ☆315Updated 3 weeks ago
• cole-trapnell-lab / monocle-release
  ☆284Updated 2 years ago
• dviraran / SingleR
  SingleR: Single-cell RNA-seq cell types Recognition (legacy version)
  ☆289Updated 4 years ago
• mousepixels / sanbomics_scripts
  scripts and notebooks from sanbomics
  ☆394Updated 3 months ago
• jinworks / CellChat
  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
  ☆367Updated 3 months ago
• theislab / scarches
  Reference mapping for single-cell genomics
  ☆358Updated 3 weeks ago