theislab / scvelo
RNA Velocity generalized through dynamical modeling
☆438Updated 2 months ago
Alternatives and similar repositories for scvelo:
Users that are interested in scvelo are comparing it to the libraries listed below
- NicheNet: predict active ligand-target links between interacting cells☆535Updated last week
- This is the alpha version of the CellOracle package☆349Updated 4 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆326Updated 9 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆500Updated last year
- Collections of library structure and sequence of popular single cell genomic methods☆461Updated 5 months ago
- A package to help convert different single-cell data formats to each other☆420Updated last year
- R package for detecting doublets in single-cell RNA sequencing data☆464Updated last month
- Scanpy Tutorials.☆212Updated this week
- A toolkit for single-cell immune profiling☆332Updated this week
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated 2 years ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆423Updated this week
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆419Updated 2 months ago
- ☆354Updated 3 years ago
- Benchmarking analysis of data integration tools☆348Updated 3 months ago
- CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.☆386Updated 4 months ago
- ☆261Updated 6 months ago
- A tool for semi-automatic cell type classification☆360Updated 2 weeks ago
- 10x Genomics Single Cell Analysis☆402Updated 3 months ago
- Single-cell epigenomics analysis tools☆257Updated last week
- Table of software for the analysis of single-cell RNA-seq data.☆322Updated this week
- TCR and BCR assembly from RNA-seq data☆304Updated last week
- ENCODE ATAC-seq pipeline☆414Updated 9 months ago
- scripts and notebooks from sanbomics☆404Updated 5 months ago
- Reference mapping for single-cell genomics☆363Updated 2 months ago
- R package for integrating and analyzing multiple single-cell datasets☆412Updated last week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆283Updated 7 months ago
- CellRank: dynamics from multi-view single-cell data☆381Updated last month
- ☆380Updated 4 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆363Updated 11 months ago
- tools and notes for spatial omics☆289Updated 2 months ago