simple library for dealing with SAM cigar strings
☆41Feb 20, 2021Updated 5 years ago
Alternatives and similar repositories for cigar
Users that are interested in cigar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- Hybrid somatic SV caller using long reads and short-read refinement for tumor–normal sequencing.☆16May 14, 2026Updated 4 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆37Oct 27, 2025Updated 11 months ago
- Useful tools for working with Salmon output☆38Jun 24, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Generate interactive dotplot from mummer4 output using plotly☆28Feb 29, 2020Updated 6 years ago
- String search using the Burrows-Wheeler transform☆19Dec 15, 2019Updated 6 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- sort genomic data☆36Nov 7, 2025Updated 11 months ago
- Optimal distance lower bound k-mer sampling.☆12Jun 19, 2024Updated 2 years ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 11 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆34Oct 7, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 3 years ago
- MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation☆141Dec 15, 2022Updated 3 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 5 months ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Jun 9, 2022Updated 4 years ago
- ☆21Dec 26, 2025Updated 9 months ago
- Tools for next-generation sequencing analysis☆90Jun 25, 2019Updated 7 years ago
- A library and tool for accessing remote BLOW5 files.☆25Jun 3, 2026Updated 4 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆15Apr 9, 2022Updated 4 years ago
- Long read / genome alignment software☆332Dec 16, 2025Updated 9 months ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 8 years ago
- Yet another k-mer analyzer☆178Dec 30, 2025Updated 9 months ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated 2 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆253Sep 29, 2026Updated 2 weeks ago
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.☆11Jan 26, 2018Updated 8 years ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 4 years ago
- CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.☆10Jun 17, 2021Updated 5 years ago