brentp / cigarLinks
simple library for dealing with SAM cigar strings
☆41Updated 4 years ago
Alternatives and similar repositories for cigar
Users that are interested in cigar are comparing it to the libraries listed below
Sorting:
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last week
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 3 weeks ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Personal diploid genome creation and coordinate conversion☆29Updated 2 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 9 months ago
- Third-generation fusion gene detection☆14Updated last year
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆22Updated last month
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Master of Pores 2☆23Updated 6 months ago