flo-compbio / singlecellLinks
SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.
☆11Updated 7 years ago
Alternatives and similar repositories for singlecell
Users that are interested in singlecell are comparing it to the libraries listed below
Sorting:
- Scripts used for the ACT paper☆12Updated 4 years ago
- glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq da…☆12Updated last month
- ☆17Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 8 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 5 years ago
- ☆25Updated 3 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- Analysis pipeline for CUT&TAG data☆20Updated 5 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆14Updated 3 years ago
- ☆18Updated 5 years ago
- A method which leverages scRNA-seq data to achieve two goals: (1) to infer the cell types in which the disease-associated genes manifest …☆26Updated 3 years ago
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆19Updated 7 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago
- ☆20Updated 2 years ago
- Toolkit for single-cell copy number analysis☆25Updated 4 months ago
- ☆52Updated last year
- ☆19Updated 2 years ago
- R package of CSOmap(developing☆13Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- ☆18Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 2 years ago
- Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data☆27Updated 5 years ago
- Cellsnake tool main repo☆35Updated last year
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆29Updated 4 years ago
- ☆29Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago