SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.
☆11Jan 26, 2018Updated 8 years ago
Alternatives and similar repositories for singlecell
Users that are interested in singlecell are comparing it to the libraries listed below
Sorting:
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆19Oct 12, 2018Updated 7 years ago
- ☆14Jul 1, 2025Updated 8 months ago
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- ☆17Apr 9, 2021Updated 4 years ago
- ☆11May 6, 2021Updated 4 years ago
- simpler single cell RNAseq data clustering☆43Feb 28, 2025Updated last year
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human H…☆13Mar 10, 2023Updated 3 years ago
- ☆11Oct 4, 2022Updated 3 years ago
- R package of CSOmap(developing☆13Mar 22, 2022Updated 4 years ago
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- ☆12Dec 16, 2021Updated 4 years ago
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Mar 27, 2021Updated 4 years ago
- Processing and plotting tools for genomics data☆22Jan 31, 2026Updated last month
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆22Dec 18, 2025Updated 3 months ago
- SHARP: Single-cell RNA-seq Hyper-fast and Accurate processing via ensemble Random Projection☆17Apr 26, 2021Updated 4 years ago
- code and dataset for spatialDWLS☆14Apr 18, 2021Updated 4 years ago
- Inferring multi-modality dynamics for single cell genomics data☆13Dec 18, 2025Updated 3 months ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Jul 7, 2016Updated 9 years ago
- Python framework for single-cell RNA-seq clustering with special focus on transfer learning.☆18Aug 29, 2019Updated 6 years ago
- ☆17Sep 17, 2019Updated 6 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 3 years ago
- ☆13Mar 2, 2020Updated 6 years ago
- ☆20Feb 17, 2021Updated 5 years ago
- ☆32Jul 20, 2018Updated 7 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 9 months ago
- Independent Component Analysis decipher functional modules for better cell clustering and annotation☆17Apr 4, 2022Updated 3 years ago
- ☆28Sep 20, 2023Updated 2 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆27Oct 7, 2022Updated 3 years ago
- A human universal senescence index to evaluate celluar senescence☆41Sep 11, 2025Updated 6 months ago
- hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data☆13Jul 12, 2024Updated last year
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- ☆20Jul 28, 2025Updated 7 months ago
- K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data☆61Aug 30, 2022Updated 3 years ago
- Cross-modal Identification of Tertiary Lymphoid Structures☆26Jun 19, 2024Updated last year
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Jan 11, 2023Updated 3 years ago
- a fully Bayesian approach to deconvolve tumor microenvironment☆60Jun 20, 2022Updated 3 years ago
- Reproducing the experiments of the DestVI paper☆22Feb 9, 2022Updated 4 years ago
- Ultra-fast 5' and 3' demultiplexer☆29Apr 23, 2024Updated last year