flo-compbio / singlecell
SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.
☆11Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for singlecell
- cell type deconvolution for multi-condition bulk RNA-seq data☆22Updated 2 years ago
- ☆40Updated 3 months ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated this week
- ☆14Updated last year
- ☆22Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- ☆20Updated last year
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- ☆30Updated 7 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆29Updated last year
- Scripts used for the ACT paper☆12Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated 11 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆31Updated last month
- R package of CSOmap(developing☆14Updated 2 years ago
- SCRIP(Single Cell Regulatory network Inference using ChIP-seq) is a tool for evaluating the binding enrichment of specific TR at single-c…☆18Updated 4 months ago
- scWGCNA☆55Updated 2 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆15Updated 10 months ago
- scripts for analyzing data of macrophage development in human☆10Updated 4 years ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆15Updated 3 years ago
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆20Updated 6 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago
- RAGE-seq scripts☆18Updated 3 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆39Updated 8 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆14Updated 4 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago