flo-compbio / singlecell
SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.
☆11Updated 7 years ago
Alternatives and similar repositories for singlecell:
Users that are interested in singlecell are comparing it to the libraries listed below
- ☆45Updated 7 months ago
- ☆15Updated last year
- Scripts used for the ACT paper☆12Updated 3 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆23Updated 3 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆21Updated 8 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆30Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆24Updated last year
- MarcoPolo is a clustering-free approach to the exploration of bimodally expressed genes along with group information in single-cell RNA-s…☆20Updated 3 months ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 4 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆14Updated 3 years ago
- ☆32Updated 10 months ago
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆20Updated 6 years ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- R package of CSOmap(developing☆14Updated 2 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆43Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq da…☆12Updated 4 months ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- ☆17Updated 4 years ago
- cell type specific, trait-associated gene regulation☆19Updated this week
- ☆31Updated 5 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 5 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆28Updated 4 years ago
- ☆22Updated 2 years ago
- ☆54Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆25Updated 4 months ago