pachterlab / sleuth_walkthroughsLinks
Some sleuth walkthroughs to help you get started
☆10Updated 7 years ago
Alternatives and similar repositories for sleuth_walkthroughs
Users that are interested in sleuth_walkthroughs are comparing it to the libraries listed below
Sorting:
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 8 months ago
- A series of scripts to automate sequence workflows☆19Updated 2 weeks ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 7 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Updated 7 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Updated 7 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Updated 3 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 7 months ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆27Updated 4 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆31Updated 10 months ago
- Integrative analysis of structural variations.☆40Updated 2 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Flexible Bayesian inference of mutational signatures☆41Updated 3 years ago
- R Interface to the NCBI SRA metadata☆23Updated 7 years ago
- Genomic plot in trellis layout☆42Updated 2 weeks ago
- interactive plots for differential expression analysis☆34Updated 7 months ago
- Using kallisto for metagenomic analysis☆49Updated 9 years ago
- ☆23Updated last month
- R package to quickly obtain count vectors from indexed bam files☆15Updated 8 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆19Updated 4 months ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- Differential expression and allelic analysis, nonparametric statistics☆30Updated last year