kevlar-dev / kevlar
Reference-free variant discovery in large eukaryotic genomes
☆41Updated 3 years ago
Alternatives and similar repositories for kevlar:
Users that are interested in kevlar are comparing it to the libraries listed below
- ☆34Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- ☆28Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Graphite - Graph-based variant adjudication☆28Updated 3 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆13Updated 4 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 8 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆32Updated last year
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- Structural variant caller☆54Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆30Updated last year