kevlar-dev / kevlar
Reference-free variant discovery in large eukaryotic genomes
☆41Updated 3 years ago
Alternatives and similar repositories for kevlar:
Users that are interested in kevlar are comparing it to the libraries listed below
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Tumour-only somatic mutation calling using long reads☆26Updated 5 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- ☆35Updated 5 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆29Updated 2 years ago
- The integrated pipeline for Indel detection☆17Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- Find Unique genomic Regions☆29Updated 2 weeks ago