kevlar-dev / kevlarLinks
Reference-free variant discovery in large eukaryotic genomes
☆41Updated 4 years ago
Alternatives and similar repositories for kevlar
Users that are interested in kevlar are comparing it to the libraries listed below
Sorting:
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 7 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- ☆35Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- ☆31Updated 3 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago