ryanlayer / ssshtestLinks
Stupid Simple (ba)Sh Testing - A functional software testing framwork
☆23Updated last year
Alternatives and similar repositories for ssshtest
Users that are interested in ssshtest are comparing it to the libraries listed below
Sorting:
- a pileup library that embraces the huge☆43Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Numerical Encoding for Human Genetic Variants☆41Updated 2 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- sort genomic data☆36Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ☆37Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated 2 years ago
- horizontal pileup☆16Updated 2 years ago
- Detect novel (and reference) STR expansions from short-read data☆67Updated 2 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Updated 7 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Error correction and variant calling algorithm for nanopore sequencing☆26Updated 9 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- ☆23Updated 3 months ago
- my PhD thesis☆36Updated 6 years ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated last year