Stupid Simple (ba)Sh Testing - A functional software testing framwork
☆23Nov 8, 2023Updated 2 years ago
Alternatives and similar repositories for ssshtest
Users that are interested in ssshtest are comparing it to the libraries listed below
Sorting:
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Jun 28, 2023Updated 2 years ago
- find large indels (in the blind spot between GATK/freebayes and SV callers)☆39Dec 3, 2017Updated 8 years ago
- fast easy interval overlapping for nim-lang☆29Jul 9, 2025Updated 8 months ago
- Integrated Variant Caller☆17Mar 15, 2018Updated 8 years ago
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- Numerical Encoding for Human Genetic Variants☆42Jun 8, 2023Updated 2 years ago
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 5 years ago
- Small general purpose library for C and Python with focus on bioinformatics.☆31Sep 15, 2022Updated 3 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- A lightweight Python graphing API for genomic features☆15Jul 8, 2022Updated 3 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- Stupid Simple Elastic Compute Cloud☆16Dec 7, 2023Updated 2 years ago
- use the noise☆15Apr 15, 2020Updated 5 years ago
- ☆15Aug 14, 2020Updated 5 years ago
- Global alignment and alignment extension☆142Jun 27, 2023Updated 2 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Simply feedforward neural network☆19Oct 4, 2016Updated 9 years ago
- Log command line events to a graph database :)☆13Mar 12, 2016Updated 10 years ago
- ☆22Jun 9, 2021Updated 4 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Aug 25, 2017Updated 8 years ago
- A pure Nim k-d tree implementation for efficient spatial querying of point data☆43Nov 10, 2020Updated 5 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- A Brand New LSH: The fly’s olfactory circuits algorithm☆11May 2, 2018Updated 7 years ago
- ☆21Dec 26, 2025Updated 2 months ago
- Standalone C library for assembling Illumina short reads in small regions☆72Dec 15, 2022Updated 3 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆101Feb 27, 2023Updated 3 years ago
- Implicit Interval Tree with Interpolation Index☆42Jul 13, 2022Updated 3 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆38Nov 19, 2024Updated last year
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆33Aug 9, 2022Updated 3 years ago
- ☆20Aug 18, 2020Updated 5 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Jul 19, 2021Updated 4 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- C++ htslib/bwa-mem/fermi interface for interrogating sequence data☆138Sep 16, 2025Updated 6 months ago