dieterich-lab / CircTestLinks
CircRNA testing and ploting R package
☆9Updated 4 years ago
Alternatives and similar repositories for CircTest
Users that are interested in CircTest are comparing it to the libraries listed below
Sorting:
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.☆9Updated 4 years ago
- ☆17Updated 11 months ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆14Updated 11 years ago
- ☆16Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Comprehensive Human Expressed SequenceS☆17Updated 10 months ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆16Updated 3 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 3 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- ☆12Updated last year
- JEME method for predicting enhancer targets☆11Updated 7 years ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated 2 years ago
- Personalized prioritization of driver genes in cancer☆9Updated 3 years ago
- Python function for TMB snake plots☆16Updated 4 years ago
- GeneDMRs is an R package to detect the differentially methylated regions based on genes, gene body, CpG islands and gene body interacted …☆10Updated last year
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 8 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year