dieterich-lab / CircTestLinks
CircRNA testing and ploting R package
☆10Updated 4 years ago
Alternatives and similar repositories for CircTest
Users that are interested in CircTest are comparing it to the libraries listed below
Sorting:
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- SCASA: Single cell transcript quantification tool☆21Updated last year
- Python function for TMB snake plots☆16Updated 5 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- Collection of R functions used in the Hochwagen Lab☆12Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Decomposition of heterogeneous DNA methylomes☆23Updated last year
- ☆16Updated 2 years ago
- scover☆23Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆12Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- HOT regions paper☆11Updated 6 years ago
- Comprehensive Human Expressed SequenceS☆18Updated 3 weeks ago
- ☆14Updated 6 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆19Updated 3 months ago
- ☆23Updated 3 years ago
- R package that allows easily performing a complete Hi-C data analysis through a Graphical User Interface☆16Updated 4 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago