brentp / tiwihLinks
simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
☆44Updated 2 years ago
Alternatives and similar repositories for tiwih
Users that are interested in tiwih are comparing it to the libraries listed below
Sorting:
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Structural variant (SV) analysis tools☆39Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 6 months ago
- (WIP) best-practices workflow for rare disease☆62Updated last year
- Fast sequencing data quality metrics☆31Updated 3 months ago
- ☆29Updated 6 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Reducing reference bias using multiple population reference genomes☆34Updated last year
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 4 years ago
- Hitting associations with k-mers☆44Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 6 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Population-wide Deletion Calling☆35Updated 8 months ago
- Automated Detection and Qualification of Differential Methylation☆16Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 4 months ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- a lexicographically-based GTF/GFF sorter☆37Updated 8 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated last week