brentp / tiwihLinks
simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
☆44Updated 2 years ago
Alternatives and similar repositories for tiwih
Users that are interested in tiwih are comparing it to the libraries listed below
Sorting:
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 3 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 2 months ago
- Fast sequencing data quality metrics☆28Updated last week
- Automated Detection and Qualification of Differential Methylation☆14Updated last year
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated last month
- Structural variant pipeline☆17Updated 5 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last week
- Structural variant caller for low-depth long-read sequencing data☆45Updated 3 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Intersect multiple VCF files with haplotype awareness☆26Updated 4 years ago
- ☆23Updated 5 months ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆32Updated 4 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- Population-wide Deletion Calling☆35Updated 5 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 6 months ago