simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
☆44Mar 29, 2023Updated 2 years ago
Alternatives and similar repositories for tiwih
Users that are interested in tiwih are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Sep 26, 2024Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 8 months ago
- Structural variant (SV) analysis tools☆41Jul 1, 2024Updated last year
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆51Apr 9, 2021Updated 4 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 4 months ago
- horizontal pileup☆16Nov 11, 2022Updated 3 years ago
- ☆32Dec 16, 2022Updated 3 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- Wavefront alignment algorithm (WFA) in Golang☆31Jul 26, 2025Updated 8 months ago
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Dec 14, 2020Updated 5 years ago
- Build an index for your BAM Index (BAI)☆17Apr 14, 2015Updated 10 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆306Nov 14, 2025Updated 4 months ago
- Fast FASTX parsing and k-mer methods in Rust☆210Jan 27, 2026Updated 2 months ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 7 years ago
- Quality of life improvements for Bioinformatics in Python.☆32Feb 28, 2026Updated 3 weeks ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 2 years ago
- GBWT-based handle graph☆31Mar 17, 2026Updated last week
- libstrbuf: A powerful string library for C☆17Oct 15, 2016Updated 9 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- ☆14Jan 20, 2016Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- ☆21Dec 26, 2025Updated 3 months ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Lossless VCF compression☆21Mar 4, 2022Updated 4 years ago
- A standalone and free application to explore genetics variations from VCF file☆108Apr 27, 2024Updated last year
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Genomic VCF to tab-separated values☆48Mar 9, 2023Updated 3 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- Efficiently read and write sequencing data from Python☆69Oct 12, 2025Updated 5 months ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- BAM Statistics, Feature Counting and Annotation☆152Mar 16, 2026Updated last week
- ☆30Mar 27, 2024Updated 2 years ago
- Visualize microbial evolution at the SNP level!☆15Aug 12, 2025Updated 7 months ago
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago