p-koo / evoaugLinks
Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics
☆23Updated 2 months ago
Alternatives and similar repositories for evoaug
Users that are interested in evoaug are comparing it to the libraries listed below
Sorting:
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 6 months ago
- ☆18Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆38Updated last month
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆20Updated last year
- Knowledge-primed neural networks☆38Updated 2 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆44Updated 10 months ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 4 months ago
- Jax code for functional genomics ML☆14Updated 5 months ago
- Interpretable splicing model☆20Updated 2 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated 4 months ago
- ☆27Updated 2 months ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 4 months ago
- Toolset for training quantitative sequence to function models.☆23Updated last year
- ☆62Updated 2 weeks ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 8 months ago
- ☆33Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆30Updated 2 weeks ago
- ☆36Updated 2 weeks ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated 11 months ago
- Machine learning methods for DNA sequence analysis.☆51Updated last month
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆17Updated last year
- A fast dataloader for bigwig files made for machine learning☆28Updated 3 months ago
- Biological Network Integration using Convolutions☆62Updated last year
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 2 months ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆44Updated 8 months ago
- ☆15Updated 3 years ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago