p-koo / evoaugLinks
Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics
☆23Updated 3 months ago
Alternatives and similar repositories for evoaug
Users that are interested in evoaug are comparing it to the libraries listed below
Sorting:
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 7 months ago
- Interpretable splicing model☆20Updated 2 years ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆20Updated last year
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆47Updated 10 months ago
- Jax code for functional genomics ML☆14Updated 5 months ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆39Updated last month
- ☆18Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 5 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆70Updated 9 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- For fine-tuning Enformer using paired WGS & gene expression data☆22Updated this week
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- Toolset for training quantitative sequence to function models.☆23Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆66Updated 2 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆81Updated last year
- Annotated sequence data☆11Updated 7 months ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 5 months ago
- Genomic sequence preprocessing toolkit☆12Updated last week
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Deep learning models to predict enhancers in different Drosophila embryo tissues☆18Updated last year
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated 2 weeks ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆44Updated 9 months ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆56Updated 3 months ago
- Machine learning methods for DNA sequence analysis.☆53Updated this week
- ☆33Updated 2 years ago
- ☆10Updated 3 years ago
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆14Updated 5 months ago
- ☆40Updated last month
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆38Updated last year