Useful tools for working with Salmon output
☆37Jun 24, 2020Updated 5 years ago
Alternatives and similar repositories for SalmonTools
Users that are interested in SalmonTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment☆885Mar 11, 2026Updated 2 months ago
- Transcript quantification import with automatic metadata detection☆72May 4, 2026Updated 2 weeks ago
- simple library for dealing with SAM cigar strings☆41Feb 20, 2021Updated 5 years ago
- Scripts to generate and analyze afdb clusters☆11Sep 15, 2023Updated 2 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Prepare Sailfish and Salmon output for downstream analysis☆41Jun 6, 2019Updated 6 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆13Aug 5, 2020Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆30Apr 16, 2020Updated 6 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated this week
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 6 months ago
- Transcript quantification import for modular pipelines☆145Apr 15, 2026Updated last month
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated last month
- See https://github.com/LTLA/SingleRBook for the latest version of this content.☆13Jun 21, 2022Updated 3 years ago
- My blog.☆16Aug 8, 2025Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Understand your transcriptome assembly☆101Mar 22, 2024Updated 2 years ago
- ☆39Apr 25, 2023Updated 3 years ago
- Some sleuth walkthroughs to help you get started☆10Jul 26, 2018Updated 7 years ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Dec 16, 2020Updated 5 years ago
- A mutation rate model at the basepair resolution identifies the mutagenic effect of Polymerase III transcription☆14Mar 17, 2026Updated 2 months ago
- personal redirect server☆17Aug 11, 2016Updated 9 years ago
- Merge transcriptome assemblies☆30Oct 6, 2016Updated 9 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆24Jul 11, 2021Updated 4 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Code and data repository for the 2020 physalia course on single cell RNA sequencing.☆59Apr 15, 2020Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- ☆16Jun 11, 2017Updated 8 years ago
- ☆14Oct 29, 2024Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆29Oct 11, 2025Updated 7 months ago
- Parsing tools for GTF (gene transfer format) files☆129May 13, 2026Updated last week
- fastq quality assessment and filtering tool☆17Dec 10, 2022Updated 3 years ago
- A fast approximate aligner for long DNA sequences☆288Oct 11, 2024Updated last year
- ☆58Apr 30, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package: determining cutoff values from bimodal data☆11Mar 17, 2024Updated 2 years ago
- ☆11May 30, 2023Updated 2 years ago
- ☆22Jan 3, 2025Updated last year
- The SomaticSignatures package offers the framework for identifying mutational signatures of single nucleotide variants (SNVs) from high-t…☆23May 25, 2020Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Apr 7, 2022Updated 4 years ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆131Apr 10, 2026Updated last month