COMBINE-lab / SalmonToolsLinks
Useful tools for working with Salmon output
☆38Updated 5 years ago
Alternatives and similar repositories for SalmonTools
Users that are interested in SalmonTools are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- BigWig and BAM utilities☆97Updated last year
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆43Updated 2 months ago
- ☆26Updated last month
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 4 months ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Evolutionary Transcriptomics with R☆45Updated this week
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆22Updated 2 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 5 months ago
- Differential ATAC-seq toolkit☆27Updated last year
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- interactive plots for differential expression analysis☆34Updated 2 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 months ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 2 weeks ago