COMBINE-lab / SalmonToolsLinks
Useful tools for working with Salmon output
☆39Updated 5 years ago
Alternatives and similar repositories for SalmonTools
Users that are interested in SalmonTools are comparing it to the libraries listed below
Sorting:
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆40Updated 2 years ago
- Personal diploid genome creation and coordinate conversion☆30Updated 10 months ago
- ☆21Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- The Zavolab Automated RNA-seq Pipeline☆36Updated last week
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Mapped QC analysis program☆43Updated 7 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆31Updated 10 months ago
- BigWig and BAM utilities☆102Updated last year
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- 10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling☆33Updated 5 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆58Updated last year
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆45Updated 2 months ago
- Evolutionary Transcriptomics with R☆47Updated this week
- ☆30Updated 7 months ago
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- JAMM Peak Finder for Sequencing Datasets☆30Updated 5 years ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆18Updated 3 months ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- A python package and a set of shell commands to handle GTF files☆50Updated 2 weeks ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Differential ATAC-seq toolkit☆28Updated 2 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 7 years ago