COMBINE-lab / SalmonToolsLinks
Useful tools for working with Salmon output
☆38Updated 5 years ago
Alternatives and similar repositories for SalmonTools
Users that are interested in SalmonTools are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- ☆26Updated last week
- Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads☆68Updated last year
- Evolutionary Transcriptomics with R☆44Updated last week
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- Personal diploid genome creation and coordinate conversion☆30Updated 3 months ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated 3 months ago
- RNA-seq workflow: differential transcript usage☆22Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- ☆21Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated last month
- chimeraviz is an R package that automates the creation of chimeric RNA visualizations.☆37Updated last year
- FREE Divergence Error-Correcting DNA Barcodes☆9Updated 7 years ago
- simplified cellranger for long-read data☆19Updated 3 months ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 11 months ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago