marcelm / dnaioLinks
Efficiently read and write sequencing data from Python
☆67Updated last month
Alternatives and similar repositories for dnaio
Users that are interested in dnaio are comparing it to the libraries listed below
Sorting:
- Reference genome resource manager☆74Updated last year
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago
- TIDDIT - structural variant calling☆76Updated 6 months ago
- BigWig and BAM utilities☆97Updated last year
- Params validation plugin for Nextflow pipelines☆48Updated last year
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 5 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 5 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 7 months ago
- Fast FASTQ sample demultiplexing in Rust.☆65Updated 4 months ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated last month
- Frequently used commands in bioinformatics☆56Updated last year
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆87Updated this week
- vembrane filters VCF records using python expressions☆64Updated 2 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated last year
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- A C library for handling bigWig files☆81Updated 8 months ago
- Merging paired-end reads and removing adapters☆46Updated last week
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 weeks ago
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆98Updated 3 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 5 months ago
- Fast sequencing data quality metrics☆28Updated last month
- for visual evaluation of read support for structural variation☆55Updated last year
- Scallop is a reference-based transcriptome assembler for RNA-seq☆90Updated 4 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- Human reference genome analysis sets☆55Updated 2 years ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 8 months ago
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated last month