marcelm / dnaioLinks
Efficiently read and write sequencing data from Python
☆66Updated 3 months ago
Alternatives and similar repositories for dnaio
Users that are interested in dnaio are comparing it to the libraries listed below
Sorting:
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago
- Reference genome resource manager☆75Updated last year
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- Fast FASTQ sample demultiplexing in Rust.☆64Updated 3 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 4 months ago
- BigWig and BAM utilities☆97Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 6 months ago
- TIDDIT - structural variant calling☆76Updated 4 months ago
- ☆49Updated 9 months ago
- Experimental features for Nextflow☆43Updated last week
- a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool☆98Updated 2 months ago
- A C library for handling bigWig files☆81Updated 7 months ago
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- Merging paired-end reads and removing adapters☆46Updated 5 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 3 months ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated 3 months ago
- Merging, Annotation, Validation, and Illustration of Structural variants☆75Updated 2 years ago
- mtDNA Variant Caller☆34Updated 8 months ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- vembrane filters VCF records using python expressions☆62Updated 3 weeks ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 7 months ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 4 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆34Updated this week
- Frequently used commands in bioinformatics☆57Updated 10 months ago