lh3 / fermi-liteLinks
Standalone C library for assembling Illumina short reads in small regions
☆72Updated 2 years ago
Alternatives and similar repositories for fermi-lite
Users that are interested in fermi-lite are comparing it to the libraries listed below
Sorting:
- High-performance error correction for Illumina resequencing data☆73Updated 9 years ago
- Rapid sensitive and accurate read mapping via quasi-mapping☆90Updated 5 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆110Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Updated 6 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- ☆96Updated 3 years ago
- Structural Variant Index☆75Updated 11 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 4 years ago
- NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms whil…☆88Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- De novo transcriptome assembler for short reads☆64Updated 7 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- JHU EN.600.649: Computational Genomics: Applied Comparative Genomics☆58Updated 7 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- A C library for handling bigWig files☆81Updated 10 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- A program to detect denovo-variants using next-generation sequencing data.☆55Updated 5 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Tools for early stage alignment file processing☆95Updated 6 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications☆90Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- ☆55Updated 5 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago