Alternatives and similar repositories for SPACEL

Users that are interested in SPACEL are comparing it to the libraries listed below

• QuKunLab / SpatialBenchmarking
  ☆122Updated 3 years ago
• TencentAILabHealthcare / spatialID
  ☆40Updated 2 years ago
• zcang / COMMOT
  ☆124Updated last year
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆44Updated last year
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆69Updated last year
• Xinyiw28 / CrossChat
  Detect hierarchical structures in cell-cell communications
  ☆13Updated 6 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆90Updated 2 weeks ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆65Updated last year
• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆25Updated 10 months ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆75Updated last year
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆32Updated 4 months ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆29Updated 3 months ago
• Patchouli-M / SequencingCancerFinder
  ☆37Updated 3 months ago
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆87Updated 8 months ago
• digitalcytometry / cytospace
  CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data
  ☆132Updated 6 months ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆36Updated last year
• dpeerlab / ENVI
  ☆50Updated 3 months ago
• leihouyeung / STdeconv_benchmark
  The benchmarking of spatial transcriptomics deconvolution methods
  ☆32Updated 2 years ago
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆13Updated last year
• JinmiaoChenLab / SEDR
  ☆60Updated 9 months ago
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆37Updated 2 weeks ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆27Updated 11 months ago
• STOmics / StereoSiTE
  Spatial transcriptome analysis in python
  ☆23Updated 6 months ago
• zhanglabtools / STAGATE
  Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics
  ☆73Updated 3 years ago
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆119Updated 2 months ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆57Updated last week
• XLearning-SCU / scBridge
  ☆21Updated last year
• ZJUFanLab / SpaTalk
  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
  ☆72Updated 7 months ago
• YMa-lab / CARD
  ☆123Updated last year
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆53Updated last year