Alternatives and similar repositories for SPACEL:

Users that are interested in SPACEL are comparing it to the libraries listed below

• TencentAILabHealthcare / spatialID
  ☆37Updated 2 years ago
• zhoux85 / STAligner
  STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.
  ☆34Updated 10 months ago
• gao-lab / SLAT
  Spatial-Linked Alignment Tool
  ☆82Updated 2 months ago
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆23Updated 4 months ago
• navinlabcode / CellTrek
  ☆114Updated 2 years ago
• QuKunLab / SpatialBenchmarking
  ☆115Updated 2 years ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆59Updated 8 months ago
• zcang / COMMOT
  ☆107Updated 9 months ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆43Updated 7 months ago
• zhaofangyuan98 / SDMBench
  ☆31Updated 8 months ago
• drieslab / spatial-datasets
  overview of spatial datasets
  ☆70Updated last year
• leihouyeung / STdeconv_benchmark
  The benchmarking of spatial transcriptomics deconvolution methods
  ☆28Updated last year
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆102Updated last year
• XLearning-SCU / scBridge
  ☆18Updated 6 months ago
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆25Updated 5 months ago
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• YingMa0107 / IRIS
  Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics
  ☆30Updated 2 weeks ago
• ZJUFanLab / SpaTalk
  Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
  ☆64Updated last month
• hongleir / SpaceFlow
  ☆25Updated last year
• ma-compbio / GAGE-seq
  Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq
  ☆11Updated 10 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆34Updated last year
• Patchouli-M / SequencingCancerFinder
  ☆31Updated last year
• STOmics / StereoSiTE
  Spatial transcriptome analysis in python
  ☆22Updated 3 weeks ago
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆33Updated 7 months ago
• Durenlab / LINGER
  ☆89Updated last month
• ZJUFanLab / scSpace
  an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…
  ☆22Updated last year
• JinmiaoChenLab / SEDR
  ☆49Updated 3 months ago
• Yelab2020 / Cottrazm
  Construct Tumor Transition Zone Microenvironment
  ☆40Updated 3 months ago
• maximemeylan / Meylan_et_al_2022
  ☆18Updated 3 years ago
• JinmiaoChenLab / GraphST
  ☆104Updated 11 months ago