☆61Jul 23, 2024Updated last year
Alternatives and similar repositories for SPACEL
Users that are interested in SPACEL are comparing it to the libraries listed below
Sorting:
- ☆12Sep 29, 2023Updated 2 years ago
- Spatial transcriptome analysis in python☆25Jan 26, 2025Updated last year
- ☆11May 24, 2024Updated last year
- ☆13Sep 30, 2024Updated last year
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆77May 24, 2024Updated last year
- Spatiotemporal modeling of spatial transcriptomics☆328Feb 10, 2026Updated 2 weeks ago
- Map large-scale single cells to the exact spatial locations☆16Jun 12, 2025Updated 8 months ago
- Spatial-Linked Alignment Tool☆90Dec 20, 2024Updated last year
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Dec 1, 2025Updated 2 months ago
- Spatial Cellular Estimator for Tumors☆61Feb 9, 2026Updated 2 weeks ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆38Dec 23, 2025Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆100Feb 26, 2025Updated last year
- ☆129Jun 10, 2022Updated 3 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- ☆14Jan 25, 2023Updated 3 years ago
- Code used to benchmark Xenium☆76Jun 30, 2024Updated last year
- BANKSY: spatial clustering☆137Oct 15, 2025Updated 4 months ago
- sEV-containing droplet identification in scRNA-seq data (SEVtras)☆26Feb 22, 2025Updated last year
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆69Nov 20, 2023Updated 2 years ago
- Axolotl Regenerative Telencehpalon Interpretation via Spatiotemporal Transcriptomic Atlas☆21Jul 3, 2022Updated 3 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Feb 20, 2025Updated last year
- A novel machine learning pipeline to analyse spatial transcriptomics data☆240Updated this week
- ☆21Jul 7, 2025Updated 7 months ago
- VT3D: a versatile Visualization Toolbox for 3D spatial transcriptomics atlas☆14Nov 6, 2024Updated last year
- ☆57Jan 2, 2024Updated 2 years ago
- A novel method for single-cell diagonal integration: scConfluence☆26Nov 3, 2025Updated 3 months ago
- BulkSignalR☆27Jul 24, 2025Updated 7 months ago
- Bayesian model for clustering and enhancing the resolution of spatial gene expression experiments.☆167Jan 8, 2026Updated last month
- A toolkit of spatial transcriptomic analysis.☆273Feb 12, 2026Updated 2 weeks ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Jun 6, 2025Updated 8 months ago
- ☆40Nov 17, 2022Updated 3 years ago
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Apr 8, 2024Updated last year
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆18Feb 13, 2023Updated 3 years ago
- ☆145Apr 19, 2025Updated 10 months ago
- ☆43May 31, 2024Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Aug 18, 2025Updated 6 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Mar 30, 2023Updated 2 years ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆73Nov 13, 2025Updated 3 months ago