QuKunLab / SPACEL
☆56Updated 8 months ago
Alternatives and similar repositories for SPACEL:
Users that are interested in SPACEL are comparing it to the libraries listed below
- overview of spatial datasets☆73Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆36Updated last year
- ☆38Updated 2 years ago
- ☆114Updated 11 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆63Updated 10 months ago
- Bayesian Analytics for Spatial Segmentation☆26Updated 6 months ago
- The benchmarking of spatial transcriptomics deconvolution methods☆30Updated 2 years ago
- Spatial-Linked Alignment Tool☆85Updated 3 months ago
- ☆116Updated 3 years ago
- ☆119Updated 2 years ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆68Updated 2 months ago
- ☆33Updated 10 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆113Updated 7 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Code used to benchmark Xenium☆56Updated 9 months ago
- ☆27Updated last year
- domain adaptation of spatial and single-cell transcriptome☆26Updated 6 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆54Updated 9 months ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆45Updated last year
- ☆20Updated 7 months ago
- Spatial Cellular Estimator for Tumors☆51Updated 3 weeks ago
- ☆54Updated 5 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆34Updated 2 months ago
- ☆12Updated 2 years ago
- ☆112Updated last year
- Predict RNA velocity through deep learning☆67Updated last year
- Spatial transcriptome analysis in python☆22Updated 2 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated last month
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆24Updated last month
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆9Updated last year