QuKunLab / SPACEL
☆49Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for SPACEL
- ☆97Updated 6 months ago
- ☆34Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆29Updated 7 months ago
- overview of spatial datasets☆67Updated 8 months ago
- A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models☆53Updated 5 months ago
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆32Updated last year
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆11Updated 7 months ago
- Spatial-Linked Alignment Tool☆79Updated 5 months ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆61Updated this week
- Predict RNA velocity through deep learning☆62Updated 10 months ago
- ☆107Updated 2 years ago
- Spatial transcriptome analysis in python☆21Updated this week
- ☆107Updated 2 years ago
- Spatial Cellular Estimator for Tumors☆41Updated this week
- Bayesian Analytics for Spatial Segmentation☆21Updated last month
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆21Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆28Updated 4 months ago
- ☆78Updated last week
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆104Updated 2 months ago
- Spatial direct messaging detected by bivariate Moran☆24Updated 6 months ago
- ☆60Updated last year
- ☆25Updated 5 months ago
- SPROD: Spatial expression profiling de-noising☆33Updated last year
- Code used to benchmark Xenium☆40Updated 4 months ago
- A tool for semi-automatic cell type harmonization and integration☆91Updated 9 months ago
- ☆99Updated 8 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆115Updated 6 months ago
- ☆17Updated 2 months ago
- ☆43Updated this week
- ☆40Updated 6 months ago