QuKunLab / SPACELLinks
☆60Updated last year
Alternatives and similar repositories for SPACEL
Users that are interested in SPACEL are comparing it to the libraries listed below
Sorting:
- ☆129Updated 3 years ago
- ☆129Updated last year
- ☆40Updated 3 years ago
- Spatial-Linked Alignment Tool☆90Updated last year
- Code used to benchmark Xenium☆73Updated last year
- STAligner is a tool for alignment and integration of spatially resolved transcriptomics data.☆50Updated last year
- Bayesian Analytics for Spatial Segmentation☆30Updated 9 months ago
- ☆52Updated 3 months ago
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆50Updated 5 months ago
- Detect hierarchical structures in cell-cell communications☆16Updated last year
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆41Updated last year
- ☆43Updated 8 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆29Updated last year
- End-to-end analysis of spatial multi-omics data☆102Updated last week
- overview of spatial datasets☆78Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆128Updated 8 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆149Updated 2 weeks ago
- Adaptive Graph Attention Auto-encoder for Spatial Domain Identification of Spatial Transcriptomics☆79Updated 3 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆70Updated 2 months ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆15Updated 3 months ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆26Updated 10 months ago
- ☆66Updated last year
- ☆129Updated last year
- domain adaptation of spatial and single-cell transcriptome☆28Updated last year
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆138Updated 11 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆109Updated 7 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆99Updated 11 months ago
- ☆15Updated 7 months ago
- ☆32Updated 2 years ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆72Updated 2 months ago