☆37Oct 22, 2025Updated 8 months ago
Alternatives and similar repositories for Spatial_PF
Users that are interested in Spatial_PF are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code used to benchmark Xenium☆86Apr 10, 2026Updated 2 months ago
- Spatial omics analysis and visualization library☆25Updated this week
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆83Nov 13, 2025Updated 7 months ago
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Code for the spatial transcriptomic paper on IPF lungs☆23Jul 18, 2024Updated last year
- Code associated with the data analysis for Miyoshi & Morabito 2024☆30Jul 8, 2025Updated 11 months ago
- ☆24Oct 31, 2024Updated last year
- Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…☆34Jul 13, 2024Updated last year
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- ☆14Jul 16, 2024Updated last year
- ☆13Mar 29, 2024Updated 2 years ago
- ☆47Jun 1, 2026Updated 3 weeks ago
- Supervised cell type identification for scATAC-seq data☆15Aug 23, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Flow2Spatial reconstructs spatial proteomics through transfer learning.☆25May 16, 2025Updated last year
- SPAtial Transcriptomics resource for subCellular and High-throughput platforms☆23Dec 10, 2024Updated last year
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆15Aug 1, 2025Updated 10 months ago
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆35Nov 30, 2023Updated 2 years ago
- ☆18Nov 5, 2024Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- ☆23Mar 22, 2023Updated 3 years ago
- ☆20May 1, 2023Updated 3 years ago
- A public MuSpAn page for community discussions and issue reporting.☆22Jun 17, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code related to Shiao, Gouin III, Ing, et al, Cancer Cell 2023.☆14Oct 27, 2023Updated 2 years ago
- End-to-end analysis of spatial multi-omics data☆116May 15, 2026Updated last month
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 7 months ago
- ☆29Apr 1, 2025Updated last year
- This repository includes codes and data example used in the "Integrative Spatial Analysis Reveals Tumor Heterogeneity and Immune Colon…☆16May 26, 2025Updated last year
- ☆53Oct 9, 2025Updated 8 months ago
- scType rewritten in python☆25Nov 7, 2024Updated last year
- a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution☆53Aug 11, 2025Updated 10 months ago
- Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms☆49Oct 22, 2025Updated 8 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆35Feb 5, 2025Updated last year
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆12Mar 3, 2025Updated last year
- Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"☆13Apr 23, 2024Updated 2 years ago
- Deposited codes for snMultiome in human cortex manuscript☆13Aug 12, 2024Updated last year
- ☆16Apr 11, 2022Updated 4 years ago
- ☆167Dec 20, 2024Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆22Dec 1, 2024Updated last year