Alternatives and similar repositories for HEST

Users that are interested in HEST are comparing it to the libraries listed below

• bowang-lab / BLEEP
  Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning
  ☆80Updated last year
• mahmoodlab / PORPOISE
  Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
  ☆230Updated 2 years ago
• almaan / her2st
  Her2 Breast Cancer Project
  ☆87Updated 3 years ago
• GuangyuWangLab2021 / Loki
  ☆110Updated 6 months ago
• JiawenChenn / STimage-1K4M
  ☆77Updated 6 months ago
• mahmoodlab / TANGLE
  Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024
  ☆113Updated last year
• recolyce / HistoCell
  ☆46Updated 8 months ago
• bryanhe / ST-Net
  Deep learning on histopathology images.
  ☆136Updated 4 years ago
• georg-wolflein / pathology-foundation-models
  List of pathology feature extractors and foundation models
  ☆159Updated 5 months ago
• bioptimus / releases
  ☆108Updated last year
• ratschlab / HistoPlexer
  ☆24Updated 8 months ago
• yrjia1015 / THItoGene
  Code for the THItoGene
  ☆25Updated 7 months ago
• mahmoodlab / PANTHER
  Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024
  ☆144Updated 9 months ago
• owkin / HE2RNA_code
  Train a model to predict gene expression from histology slides.
  ☆109Updated 3 years ago
• mahmoodlab / MMP
  Multimodal prototyping for cancer survival prediction - ICML 2024
  ☆102Updated 9 months ago
• Weiqin-Zhao / Hist2Cell
  ☆17Updated last week
• taliq / TEA-graph
  First commit
  ☆64Updated 3 years ago
• BiomedSciAI / histocartography
  A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…
  ☆261Updated last year
• fedshyvana / pathology_mllm_training
  ☆121Updated last year
• mahmoodlab / Patho-Bench
  Standardized benchmark for computational pathology foundation models.
  ☆119Updated 3 weeks ago
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆85Updated last year
• gevaertlab / MultiModalBrainSurvival
  ☆21Updated 2 years ago
• KatherLab / STAMP
  Solid Tumor Associative Modeling in Pathology
  ☆102Updated last week
• AdalbertoCq / Histomorphological-Phenotype-Learning
  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…
  ☆77Updated 10 months ago
• mahmoodlab / TriPath
  Analysis of 3D pathology samples using weakly supervised AI - Cell
  ☆109Updated 10 months ago
• maxpmx / HisToGene
  PyTorch implementation of HisToGene
  ☆43Updated 4 years ago
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆112Updated last year
• biomed-AI / Hist2ST
  ☆51Updated 3 years ago
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆75Updated 9 months ago
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆62Updated last year