buettnerlab / convexgating
Optimal gating strategies for flow and mass cytometry.
☆11Updated last week
Alternatives and similar repositories for convexgating:
Users that are interested in convexgating are comparing it to the libraries listed below
- ☆26Updated 6 months ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆17Updated last week
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆34Updated 5 months ago
- Minimum Information about Tissue Imaging☆20Updated last year
- Automatically annotate cell types, consistently across samples.☆10Updated this week
- Interoperability between SpatialData and the Xenium Explorer☆21Updated 8 months ago
- Create PyTorch Datasets from AnnData☆20Updated last month
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆14Updated 2 weeks ago
- The complete FlowSOM package known from R, now available in Python!☆19Updated this week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 7 months ago
- CAST package☆34Updated 5 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated last week
- Python package for Probe set selection for targeted spatial transcriptomics.☆36Updated 4 months ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆16Updated 5 months ago
- Test genes for Spatial Variation☆14Updated 4 months ago
- Analyzing cellular niches in spatial transcriptomics data☆29Updated 5 months ago
- Work with trained factor models in Python☆31Updated 6 months ago
- Segmentation error aware clustering for multiplexed imaging☆17Updated 3 months ago
- Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).☆18Updated 4 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆25Updated this week
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆21Updated last week
- Slides and Notebooks for scverse 2024☆17Updated 6 months ago
- ☆12Updated 10 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆53Updated 3 weeks ago
- ☆25Updated 5 years ago
- ☆16Updated 9 months ago
- ☆12Updated 3 weeks ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆12Updated 3 weeks ago
- ☆21Updated 2 years ago