buettnerlab / convexgatingLinks
Optimal gating strategies for flow and mass cytometry.
☆15Updated 6 months ago
Alternatives and similar repositories for convexgating
Users that are interested in convexgating are comparing it to the libraries listed below
Sorting:
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆36Updated 10 months ago
- ☆29Updated last year
- Minimum Information about Tissue Imaging☆20Updated last year
- Slides and Notebooks for scverse 2024☆17Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆36Updated 2 weeks ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 3 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated last month
- Build contrasts for models defined with formulaic☆13Updated last week
- ☆18Updated 4 months ago
- Automatically annotate cell types, consistently across samples.☆16Updated last month
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated last year
- ☆27Updated 11 months ago
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆23Updated last week
- Python API and Jupyter widget for Vitessce☆56Updated this week
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆21Updated 6 months ago
- Segmentation error aware clustering for multiplexed imaging☆19Updated 9 months ago
- ☆29Updated last year
- ☆72Updated this week
- Static plotting for spatialdata