buettnerlab / convexgatingLinks
Optimal gating strategies for flow and mass cytometry.
☆13Updated 3 months ago
Alternatives and similar repositories for convexgating
Users that are interested in convexgating are comparing it to the libraries listed below
Sorting:
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆36Updated 7 months ago
- ☆27Updated 9 months ago
- Minimum Information about Tissue Imaging☆20Updated last year
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆28Updated last week
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆11Updated last year
- Build contrasts for models defined with formulaic☆13Updated last week
- Python API and Jupyter widget for Vitessce☆49Updated this week
- ☆12Updated 2 months ago
- Segmentation error aware clustering for multiplexed imaging☆18Updated 6 months ago
- Automatically annotate cell types, consistently across samples.☆14Updated 2 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆53Updated 2 weeks ago
- ☆17Updated last month
- ☆63Updated 2 weeks ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆47Updated this week
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Updated 10 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆29Updated last month
- An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.☆19Updated last week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 9 months ago
- ☆27Updated 9 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago
- Slides and Notebooks for scverse 2024☆17Updated 9 months ago
- Single-cell spatial proteomics analysis that makes you happy!☆30Updated last week
- ☆29Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆80Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 5 months ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆20Updated 3 months ago
- Framework for image and flow cytometry analysis☆27Updated 2 months ago
- Static plotting for spatialdata☆62Updated this week
- A plugin to visualise 3D spatial single cell omics☆22Updated 3 weeks ago