Optimal gating strategies for flow and mass cytometry.
☆16Jul 22, 2026Updated 3 weeks ago
Alternatives and similar repositories for convexgating
Users that are interested in convexgating are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Build contrasts for models defined with formulaic☆13Updated this week
- Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effe…☆46Jul 8, 2026Updated last month
- Flow & mass cytometry analytics.☆61Updated this week
- A web app to create and run smart trainer workouts.☆12Updated this week
- ☆19Mar 15, 2017Updated 9 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 9 months ago
- ☆10Nov 29, 2022Updated 3 years ago
- Fast reconstruction of spatial networks from bioimages.☆26Mar 27, 2026Updated 4 months ago
- ☆17Updated this week
- A multi-dimensional spatial image data structure for scientific Python.☆44Aug 8, 2025Updated last year
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆56Jun 23, 2026Updated last month
- multimodal whole slide image registration in a graph structure☆103Jul 4, 2024Updated 2 years ago
- Spatial RNA velocity☆10Oct 3, 2024Updated last year
- Official implementation of our work: "Automated Identification of Cell Populations in Flow Cytometry Data with Transformers"☆17Jun 30, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A DIY Guide To BLAST Tools For Sequence Alignment☆17Aug 9, 2024Updated 2 years ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- Wishbone is an algorithm to align cells along developmental trajectories with branches☆20May 14, 2020Updated 6 years ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆19Jul 23, 2026Updated 3 weeks ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 9 months ago
- ☆18May 15, 2026Updated 2 months ago
- ☆26Jul 16, 2024Updated 2 years ago
- Genomic Features in Python from BioConductor's AnnotationHub☆23Updated this week
- A Python library for reading and writing Flow Cytometry Standard (FCS) files☆58Nov 5, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆70Sep 19, 2025Updated 10 months ago
- Command line client and Python libraries for CosmosID API☆13Oct 28, 2025Updated 9 months ago
- Huge-scale, high-performance flow cytometry clustering in Julia☆36Nov 3, 2025Updated 9 months ago
- ☆55Oct 9, 2025Updated 10 months ago
- The BioContextAI Registry for biomedical MCP servers☆21Jul 29, 2026Updated 2 weeks ago
- Registry for scverse ecosystem packages☆38Updated this week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Oct 8, 2025Updated 10 months ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆29Mar 11, 2025Updated last year
- Implementation of multiplex Leiden for analysis of spatial omics data☆22Jul 7, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Python API and Jupyter widget for Vitessce☆67Updated this week
- A writer and reader for NGFF OME-Zarr datasets☆14Nov 2, 2021Updated 4 years ago
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 5 months ago
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆28Apr 29, 2026Updated 3 months ago
- ☆100Updated this week
- ☆39Mar 24, 2023Updated 3 years ago
- Subpopulation detection in high-dimensional single-cell data☆75Oct 5, 2020Updated 5 years ago