Phenotype Associated Spatial Signature Analysis with Graph-based Embedding
☆26Mar 5, 2025Updated last year
Alternatives and similar repositories for PASSAGE
Users that are interested in PASSAGE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Map large-scale single cells to the exact spatial locations☆21Jun 9, 2026Updated 2 months ago
- DECIPHER for learning high-fidelity disentangled embeddings from spatial omics data☆25Jan 20, 2026Updated 7 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- The computational and statistical analyses of TenK10K phase 1 multiome data☆19May 12, 2026Updated 3 months ago
- ☆14Jan 24, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for spatial subclone paper☆18Jan 23, 2025Updated last year
- 中国科学院大学2023Fall-图像处理课程作业与复习真题资料☆24Jan 7, 2024Updated 2 years ago
- A unified framework for identifying multicellular niches and niche-regulated cell states from spatial transcriptomics data.☆17Aug 3, 2026Updated 3 weeks ago
- This repository contains codes used for the human fetal limb cell atlas.☆17Jan 28, 2025Updated last year
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- CAST package☆43Oct 26, 2024Updated last year
- Public repo containing code to train, visualize, and evaluate semi-supervised topic models and baselines for regression/classification on…☆11Apr 15, 2020Updated 6 years ago
- scMODAL: A general deep learning framework for single-cell Multi-Omics Data Alignment with feature Links☆23Jun 10, 2025Updated last year
- Spatial-Linked Alignment Tool☆95Dec 20, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆11Jan 12, 2024Updated 2 years ago
- ☆16Sep 1, 2023Updated 3 years ago
- ☆18Nov 5, 2024Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆22Sep 12, 2023Updated 2 years ago
- MuDCoD: Multi-subject Dynamic Community Detection☆11Mar 18, 2025Updated last year
- Molecular interactions inference from single-cell multi-omics data☆32May 7, 2026Updated 3 months ago
- ☆20Oct 24, 2023Updated 2 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- BioTIP: Biological Tipping-Point Identification and Characterization☆24Oct 20, 2025Updated 10 months ago
- Computational pipeline to process EasySci-RNA data.☆23Jan 17, 2024Updated 2 years ago
- VirusScan Pipeline☆12Feb 7, 2026Updated 6 months ago
- ☆19Mar 31, 2023Updated 3 years ago
- ☆11Feb 1, 2023Updated 3 years ago
- ☆18Jan 29, 2022Updated 4 years ago
- ☆69Apr 22, 2026Updated 4 months ago
- ☆13Jun 6, 2024Updated 2 years ago
- INSPIRE: interpretable, flexible and spatially-aware integration of multiple spatial transcriptomics datasets from diverse sources☆22May 28, 2026Updated 3 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- funny geom/stat functions for visualization☆12Aug 30, 2023Updated 3 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆17Aug 1, 2025Updated last year
- Transfer polygon(float vertex) to a mask which demonstrate the inner points of polygon, implement by Python☆10Oct 19, 2019Updated 6 years ago
- Interactive visualisation of CellphoneDB results☆13Jan 15, 2025Updated last year
- ☆16Jul 23, 2026Updated last month
- biostat final exam data and code☆10Jun 12, 2020Updated 6 years ago
- ☆15Jul 24, 2024Updated 2 years ago