JianYang-Lab / gsMap
Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
☆44Updated last week
Alternatives and similar repositories for gsMap:
Users that are interested in gsMap are comparing it to the libraries listed below
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆71Updated 5 months ago
- This repository holds the scripts used to analyze the data presented in "A multi-omic single-cell landscape of human gynecologic malignan…☆38Updated last year
- ☆29Updated last year
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 4 years ago
- Cellular dynamics across aged human brains uncover a multicellular cascade leading to Alzheimer’s disease☆48Updated 2 months ago
- An integrated platform for modeling gene-regulatory dynamics and networks☆31Updated 7 months ago
- Single-cell disease relevance score (scDRS)☆120Updated 4 months ago
- ☆49Updated 5 months ago
- scripts associated with NAFLD-NASH project☆20Updated 9 months ago
- Functional Inference of Gene Regulation☆40Updated 7 months ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆41Updated last week
- Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data☆17Updated 3 months ago
- ☆17Updated 6 months ago
- ☆25Updated last week
- ☆30Updated 2 years ago
- Single cell RNA-seq analysis bundle☆34Updated 5 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆63Updated last month
- Removing empty droplets in multiome datasets☆15Updated 9 months ago
- ☆102Updated last year
- single-cell clustering based on alternative splicing landscapes☆19Updated 11 months ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022☆37Updated last year
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆93Updated 5 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆52Updated 2 years ago
- ☆14Updated last year
- Contains code to analyze the OneK1K data and perform eQTL mapping of 14 cell types☆26Updated 3 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆54Updated 10 months ago
- Analysis of cell-cell communication at single-cell resolution☆100Updated 5 months ago
- ☆14Updated last year
- ☆45Updated 3 years ago
- A R package for advanced single cell data viz☆64Updated last year