YosefLab / popVLinks
☆79Updated this week
Alternatives and similar repositories for popV
Users that are interested in popV are comparing it to the libraries listed below
Sorting:
- Direct estimation of mean and covariance from single cell RNA seq experiments☆110Updated 2 months ago
- A tool for semi-automatic cell type harmonization and integration☆108Updated 3 months ago
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆77Updated 3 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated this week
- R implementation of GeneTrajectory☆59Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- Python implementation of Milo for differential abundance testing on KNN graph☆72Updated 4 months ago
- Metacells - Single-cell RNA Sequencing Analysis☆108Updated 9 months ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆131Updated 4 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆74Updated 5 months ago
- trajectory inference☆104Updated 5 months ago
- ☆54Updated 2 weeks ago
- inferring regulatory cellular dynamics☆48Updated last week
- Single cell omics biology annotations☆51Updated 2 months ago
- Gene group activity utility functions for Scanpy☆79Updated 6 months ago
- Single-Cell Clustering Assessment Framework☆103Updated last year
- Methods to compute Local Inverse Simpson's Index (LISI)☆64Updated 3 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆61Updated last week
- ☆122Updated 3 years ago
- Clonotype Neighbor Graph Analysis☆89Updated 2 weeks ago
- BANKSY: spatial clustering☆117Updated 2 weeks ago
- Create cisTarget databases☆52Updated 3 weeks ago
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆53Updated last month
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆60Updated last year
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆109Updated 5 months ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆164Updated 3 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆107Updated 2 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆117Updated this week